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Dbit#95

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LucaMarconato merged 99 commits intoscverse:mainscverse/spatialdata-io:mainfrom lillux:dbitlillux/spatialdata-io:dbitCopy head branch name to clipboardFeb 9, 2024

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Commits on Dec 1, 2023

• Added draft of DBiT reader

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• Hardcoded variable for grid scaling

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• Merge branch 'main' of https://github.com/lillux/spatialdata-io

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• Added comments

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• Ignore spyder data

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• Remove spyder data

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• Removed metadata

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Commits on Dec 4, 2023

• Add symbol export spec in DBiT

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• Fixed typos

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• Added _constants for DBiT, and related check

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Commits on Dec 5, 2023

• Open .h5ad with anndata instead of scanpy

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• Merge branch 'dbit' of https://github.com/lillux/spatialdata-io into dbit

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• Fixed import

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• fixes from pre-commit.ci

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• fixed exceptions and type hints

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• Fix typing

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• fixed variable names

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Commits on Jan 9, 2024

• Merge branch 'scverse:main' into dbit

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Commits on Jan 10, 2024

• Merge branch 'scverse:main' into dbit

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Commits on Jan 17, 2024

• code revision started

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• Code revision part 2

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• code revision fix docstring

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Commits on Jan 18, 2024

• Code revision small fixes

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• Code review small fixes to docstrings

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• Typo

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• Docs fix

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• Typo docstring

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• Fixing docstring

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• Docstring done. Fixing typo

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Commits on Jan 23, 2024

• Fixed dbit function to remove duplcated code

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• Docstring fix

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• Docstring fix

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• Working on type hints in docstring

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• Mypy

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• Merge branch 'scverse:main' into dbit

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• Now the dimension of the DBiT grid depends on the number of barcodes.

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• Docstrings fix

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• Added DBiT-seq reader to changelog

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• Merge branch 'scverse:main' into dbit

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