addded missing semicolon

rulixxx · Jun 18, 2023 · 3c3999b · 3c3999b
1 parent e8c1f4e
commit 3c3999b
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/python/runNanoSeq.py b/python/runNanoSeq.py
@@ -1208,8 +1208,8 @@ def vcfHeader(args):
         cmd = "cp %s merged.vcf.gz ;"% vcf2Merge.pop(0)
         for ifile in vcf2Merge[1:]:
             cmd += " bcftools  concat --no-version -Oz -o tmp.xxx.vcf.gz merged.vcf.gz %s; mv tmp.xxx.vcf.gz merged.vcf.gz; "%ifile
-        cmd += "; bcftools sort -Oz -o %s/post/%s.indel.vcf.gz merged.vcf.gz" % (tmpDir, args.name)
-        cmd += ";bcftools index -t -f %s/post/%s.indel.vcf.gz " % (
+        cmd += "bcftools sort -Oz -o %s/post/%s.indel.vcf.gz merged.vcf.gz;" % (tmpDir, args.name)
+        cmd += "bcftools index -t -f %s/post/%s.indel.vcf.gz " % (
             tmpDir, args.name)
         runCommand(cmd)