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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,39 @@ | ||
| #' Check of the required environment symbols | ||
| #' | ||
| #' @details the environment symbols from the analysis context should be | ||
| #' set via the ``set_config`` function. | ||
| #' | ||
| const check_dependency.context_env = function(requires, context) { | ||
| const env = context$configs; | ||
| const map = { | ||
| 'any': "any", | ||
| 'numeric': "num", | ||
| 'integer': "int", | ||
| 'character': "chr", | ||
| 'logical': "logi", | ||
| 'function': "function" | ||
| }; | ||
| const env_symbols = names(env); | ||
| const err = list( | ||
| "environment_symbols(all)" = `[${paste(env_symbols, sep = ", ")}]` | ||
| ); | ||
|
|
||
| for(name in names(requires)) { | ||
| const mark = requires[[name]]; | ||
| const missing = !(name in env); | ||
|
|
||
| if (missing) { | ||
| err[[name]] = "missing"; | ||
| } else if (mark != "any") { | ||
| if (map[[mark]] != typeof(env[[name]])) { | ||
| err[[name]] = "mis-matched"; | ||
| } | ||
| } | ||
| } | ||
|
|
||
| if (length(err) <= 1) { | ||
| NULL; | ||
| } else { | ||
| return(err); | ||
| } | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,42 @@ | ||
| #' Check for the upstream file dependency | ||
| #' | ||
| #' @param requires the required temp work files, should be a tuple list | ||
| #' object that contains the app reference and the related temp workfile, | ||
| #' example data format of this tuple list would be: | ||
| #' | ||
| #' list(app1 = [file1, file2, ...], app2 = file3, ...) | ||
| #' | ||
| #' @details the workfile path in the ``requires`` tuple file list should be | ||
| #' a relative file path which is relative to the app workdir | ||
| #' | ||
| const check_dependency.localfiles = function(requires, context) { | ||
| const err = list(); | ||
| const verbose = as.logical(getOption("verbose")); | ||
|
|
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| if (verbose) { | ||
| print("checks for the required app dependency modules:"); | ||
| print(names(requires)); | ||
|
|
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| str(requires); | ||
| } | ||
|
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| for(appName in names(requires)) { | ||
| # the required file in the requires list is a relative file | ||
| # path which is relative to the app workspace | ||
| # the full path will be combine in this for loop and then | ||
| # test for work file is exists or not. | ||
| const workdir = WorkflowRender::workspace(appName); | ||
| const file_rels = requires[[appName]]; | ||
| const checks = `${workdir}/${file_rels}` |> which(filename -> !file.exists(filename)); | ||
|
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| if (length(checks) > 0) { | ||
| err[[appName]] = checks; | ||
| } | ||
| } | ||
|
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| if (length(err) == 0) { | ||
| NULL; | ||
| } else { | ||
| return(err); | ||
| } | ||
| } |