Extend required packages

.github/workflows/fast-model-mpi-explosion.yml

@@ -20,7 +20,7 @@ jobs:
         pip3 install pytest pytest-cov pytest-randomly coverage black
         # TODO: Remove fixed numpy and pynn versions after the PyNN pull request
         # https://github.com/NeuralEnsemble/PyNN/pull/762 is accepted
-        pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython pynn==0.10.0 psutil future requests elephant pytest-xdist pytest-timeout junitparser numba
+        pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython pynn==0.10.0 psutil future requests elephant pytest-xdist pytest-timeout junitparser numba numpyencoder sphinx
     - name: Download and install imagen
       run: |
         git clone https://github.com/antolikjan/imagen.git

.github/workflows/fast-model-mpi.yml

@@ -20,7 +20,7 @@ jobs:
         pip3 install pytest pytest-cov pytest-randomly coverage black
         # TODO: Remove fixed numpy and pynn versions after the PyNN pull request
         # https://github.com/NeuralEnsemble/PyNN/pull/762 is accepted
-        pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython pynn==0.10.0 psutil future requests elephant pytest-xdist pytest-timeout junitparser numba
+        pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython pynn==0.10.0 psutil future requests elephant pytest-xdist pytest-timeout junitparser numba numpyencoder sphinx
     - name: Download and install imagen
       run: |
         git clone https://github.com/antolikjan/imagen.git

.github/workflows/fast-model-stepcurrentmodule.yml

@@ -19,7 +19,7 @@ jobs:
         pip3 install pytest pytest-cov pytest-randomly coverage black
         # TODO: Remove fixed numpy and pynn versions after the PyNN pull request
         # https://github.com/NeuralEnsemble/PyNN/pull/762 is accepted
-        pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython psutil future requests elephant pytest-xdist pytest-timeout junitparser numba
+        pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython psutil future requests elephant pytest-xdist pytest-timeout junitparser numba numpyencoder sphinx
 
     - name: Download and install imagen
       run: |

.github/workflows/fast-model.yml

@@ -19,7 +19,7 @@ jobs:
         pip3 install pytest pytest-cov pytest-randomly coverage black
         # TODO: Remove fixed numpy and pynn versions after the PyNN pull request
         # https://github.com/NeuralEnsemble/PyNN/pull/762 is accepted
-        pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython pynn==0.10.0 psutil future requests elephant pytest-xdist pytest-timeout junitparser numba
+        pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython pynn==0.10.0 psutil future requests elephant pytest-xdist pytest-timeout junitparser numba numpyencoder sphinx
 
     - name: Download and install imagen
       run: |

.github/workflows/lsv1m-model.yml

@@ -19,7 +19,7 @@ jobs:
         pip3 install pytest pytest-cov pytest-randomly coverage black
         # TODO: Remove fixed numpy and pynn versions after the PyNN pull request
         # https://github.com/NeuralEnsemble/PyNN/pull/762 is accepted
-        pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython pynn==0.10.0 psutil future requests elephant pytest-xdist pytest-timeout junitparser numba
+        pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython pynn==0.10.0 psutil future requests elephant pytest-xdist pytest-timeout junitparser numba numpyencoder sphinx
 
     - name: Download and install imagen
       run: |

.github/workflows/unit-tests.yml

@@ -19,7 +19,7 @@ jobs:
         pip3 install pytest pytest-cov pytest-randomly coverage black
         # TODO: Remove fixed numpy and pynn versions after the PyNN pull request
         # https://github.com/NeuralEnsemble/PyNN/pull/762 is accepted
-        pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython pynn==0.10.0 psutil future requests elephant pytest-xdist pytest-timeout junitparser numba
+        pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython pynn==0.10.0 psutil future requests elephant pytest-xdist pytest-timeout junitparser numba numpyencoder sphinx
 
     - name: Download and install imagen
       run: |

README.rst

@@ -51,7 +51,7 @@ ____________
 
 Now you can install all other dependencies in this protected environment::
 
-  pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython psutil future requests elephant pytest-xdist pytest-timeout junitparser numba
+  pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython psutil future requests elephant pytest-xdist pytest-timeout junitparser numba numpyencoder sphinx
 
 Next we will manually install several packages. It is probably the best if you create a separate directory in an appropriate
 place, where you will download and install the packages from.