Merge pull request #97 from RCagnol/master #10
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| name: Fast model stepcurrentmodule tests | |
| on: [push, pull_request] | |
| jobs: | |
| pytest: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Pytest Unit Tests | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.9' | |
| - name: Install prerequisites | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install python3-setuptools subversion git libopenmpi-dev g++ libjpeg8 libjpeg8-dev libfreetype6 libfreetype6-dev zlib1g-dev libpng++-dev libncurses5 libncurses5-dev libreadline-dev liblapack-dev libblas-dev gfortran libgsl0-dev openmpi-bin python-tk cmake | |
| pip3 install pytest pytest-cov pytest-randomly coverage black | |
| # TODO: Remove fixed numpy and pynn versions after the PyNN pull request | |
| # https://github.com/NeuralEnsemble/PyNN/pull/762 is accepted | |
| pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo==0.12.0 cython psutil future requests elephant pytest-xdist pytest-timeout junitparser numba | |
| - name: Download and install imagen | |
| run: | | |
| git clone https://github.com/antolikjan/imagen.git | |
| cd imagen | |
| python setup.py install | |
| cd .. | |
| - name: Download and install PyNN | |
| run: | | |
| git clone https://github.com/CSNG-MFF/PyNN.git | |
| cd PyNN | |
| git checkout PyNNStepCurrentModule | |
| pip install . | |
| cd .. | |
| - name: Install Nest | |
| run: | | |
| wget https://github.com/nest/nest-simulator/archive/v3.4.tar.gz | |
| tar xvfz v3.4.tar.gz | |
| cd nest-simulator-3.4 | |
| cmake -Dwith-mpi=ON -Dwith-boost=ON -DCMAKE_INSTALL_PREFIX:PATH=$pythonLocation -Dwith-optimize='-O3' ./ | |
| make -j8 | |
| make -j8 install | |
| cd .. | |
| python -c 'import nest' | |
| - name: Install stepcurrentmodule | |
| run: | | |
| git clone https://github.com/CSNG-MFF/nest-step-current-module.git | |
| cd nest-step-current-module | |
| cmake -Dwith-mpi=ON -Dwith-boost=ON -Dwith-nest=$pythonLocation/bin/nest-config -Dwith-optimize='-O3' ./ | |
| make -j8 | |
| make -j8 install | |
| cd .. | |
| - name: Install mozaik | |
| run: python setup.py install | |
| - name: Test with pytest | |
| run: pytest tests --cov=mozaik -m "stepcurrentmodule" |