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[AUTO] Update data #94

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merged 10 commits into from
Jun 24, 2024
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sangovae-bot
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Brief description

This is an automatically generated PR.
The following steps are all automatically performed:

  • Fetch raw data
  • Map raw data to DwC standard and save the output in ./data/processed
  • Get an overview of the changes
  • Run some tests, e.g. check the uniqueness of occurrenceID, check that all occurrences have a eventID and scientificName, check that samplingProtocol and individualCount are correctly set.

Note to the reviewer: the workflow automation is still in a development phase. Please, check the output thoroughly before merging to main. In case, improve the data fecthing fetch_data.Rmd, the mapping dwc_mapping.Rmd, both in ./src or the GitHub workflows fetch-data.yaml and mapping_and_testing.yaml in ./.github/workflows.

Files changed:
M	data/raw/vissen_en_crustacea.csv
sangovae-bot and others added 2 commits June 19, 2024 08:05
Files changed:
M	data/processed/event.csv
M	data/processed/mof.csv
M	data/processed/occurrence.csv
@sannegovaert
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Changes

  • 3310 new events
  • 3310 new occurrences
  • 0 removed events
  • 0 removed occurrences
  • 10185 extra rows in measurments or facts extension
  • 11 new species

@sannegovaert sannegovaert merged commit 8ce6be8 into main Jun 24, 2024
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@sannegovaert sannegovaert deleted the automatic-update-2024-06-19T07-42-11Z branch June 24, 2024 08:50
@sannegovaert sannegovaert mentioned this pull request Jun 24, 2024
@filipmahieu
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If we use scientific names that are not correct, you can always write this to us, then we change it in our database.

@sannegovaert
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If we use scientific names that are not correct, you can always write this to us, then we change it in our database.

I just wrote an issue about this #96

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4 participants