Whole Network Analysis (AIS)

To analyse the whole network, use the analyse_network method and provide the required data and settings arguments.

results = network_analysis.analyse_network(settings=settings,
                                           data=data)

The algorithm will loop over all processes in the network and analyse each of them separately. The results will finally be combined in an Results object. By default, an FDR correction will be performed when combining the results from different processes (Benjamini, 1995, J Royal Stat Soc B, 57(1)). In order to skip the FDR correction, refer to the tutorial on Statistical Significance Tests.

Restricting the set of processes analysed

The optional argument processes can be passed to the analyse_network method in order to restrict the analysis to a specific list of processes.

results = network_analysis.analyse_network(settings=settings,
                                           data=data,
                                           processes=[0, 2, 3])