tightened imports

prody · Feb 17, 2021 · 003d486 · 003d486
1 parent c7cab38
commit 003d486
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Showing 3 changed files with 12 additions and 18 deletions.
diff --git a/prody/hybrid/adaptive.py b/prody/hybrid/adaptive.py
@@ -20,11 +20,11 @@
 
 from prody import LOGGER
 from prody.atomic import Atomic, AtomMap
-from prody.utilities import getCoords, createStringIO, importLA, mad
+from prody.utilities import getCoords, createStringIO, importLA
 
-from prody.measure import calcRMSD, calcDistance, superpose, applyTransformation
-from prody.proteins import writePDB, parsePDB, writePDBStream, parsePDBStream
-from prody.ensemble import Ensemble
+from prody.measure.transform import calcTransformation, applyTransformation, calcRMSD
+from prody.ensemble.ensemble import Ensemble
+from prody.proteins.pdbfile import writePDBStream, parsePDBStream
 
 from prody.dynamics.functions import calcENM
 from prody.dynamics.modeset import ModeSet

diff --git a/prody/hybrid/clustenm.py b/prody/hybrid/clustenm.py
@@ -43,11 +43,9 @@
 from prody.dynamics.exanm import exANM
 from prody.dynamics.editing import extendModel
 from prody.dynamics.sampling import sampleModes
-from prody.atomic import AtomGroup
-from prody.measure import calcTransformation, applyTransformation, calcRMSD
-from prody.ensemble import Ensemble
-from prody.proteins import writePDB, parsePDB, writePDBStream, parsePDBStream
-from prody.utilities import createStringIO, importLA, mad
+
+from prody.measure.transform import calcTransformation, applyTransformation, calcRMSD
+from prody.proteins.pdbfile import writePDB, writePDBStream, parsePDBStream
 
 from .hybrid import Hybrid
 

diff --git a/prody/hybrid/hybrid.py b/prody/hybrid/hybrid.py
@@ -39,17 +39,13 @@
 
 from prody.dynamics.anm import ANM
 from prody.dynamics.gnm import GNM, ZERO
-from prody.dynamics.rtb import RTB
-from prody.dynamics.imanm import imANM
-from prody.dynamics.exanm import exANM
 from prody.dynamics.editing import extendModel
-from prody.dynamics.sampling import sampleModes
 
-from prody.atomic import AtomGroup, Atomic
-from prody.measure import calcTransformation, applyTransformation, calcRMSD
-from prody.ensemble import Ensemble
-from prody.proteins import writePDB, writePDBStream, parsePDBStream, EMDMAP
-from prody.utilities import createStringIO, importLA, mad, getCoords
+from prody.measure.transform import calcTransformation, applyTransformation, calcRMSD
+from prody.ensemble.ensemble import Ensemble
+from prody.proteins.pdbfile import writePDB, writePDBStream, parsePDBStream
+
+from prody.utilities import createStringIO, importLA, mad
 
 la = importLA()
 norm = la.norm