Merge pull request #111 from prism-em/dev

Merge 2.0 dev into master for release.

.azure-pipelines/azure-pipelines-linux.yml

@@ -0,0 +1,54 @@
+# This file was generated automatically from conda-smithy. To update this configuration,
+# update the conda-forge.yml and/or the recipe/meta.yaml.
+# -*- mode: yaml -*-
+
+jobs:
+- job: linux
+  pool:
+    vmImage: ubuntu-16.04
+  strategy:
+    matrix:
+      linux_64_c_compiler_version7cuda_compiler_version10.0cxx_compiler_version7:
+        CONFIG: linux_64_c_compiler_version7cuda_compiler_version10.0cxx_compiler_version7
+        UPLOAD_PACKAGES: 'True'
+        DOCKER_IMAGE: condaforge/linux-anvil-cuda:10.0
+      linux_64_c_compiler_version7cuda_compiler_version10.1cxx_compiler_version7:
+        CONFIG: linux_64_c_compiler_version7cuda_compiler_version10.1cxx_compiler_version7
+        UPLOAD_PACKAGES: 'True'
+        DOCKER_IMAGE: condaforge/linux-anvil-cuda:10.1
+      linux_64_c_compiler_version7cuda_compiler_version10.2cxx_compiler_version7:
+        CONFIG: linux_64_c_compiler_version7cuda_compiler_version10.2cxx_compiler_version7
+        UPLOAD_PACKAGES: 'True'
+        DOCKER_IMAGE: condaforge/linux-anvil-cuda:10.2
+      linux_64_c_compiler_version7cuda_compiler_version9.2cxx_compiler_version7:
+        CONFIG: linux_64_c_compiler_version7cuda_compiler_version9.2cxx_compiler_version7
+        UPLOAD_PACKAGES: 'True'
+        DOCKER_IMAGE: condaforge/linux-anvil-cuda:9.2
+      linux_64_c_compiler_version7cuda_compiler_versionNonecxx_compiler_version7:
+        CONFIG: linux_64_c_compiler_version7cuda_compiler_versionNonecxx_compiler_version7
+        UPLOAD_PACKAGES: 'True'
+        DOCKER_IMAGE: condaforge/linux-anvil-comp7
+  timeoutInMinutes: 360
+
+  steps:
+  - script: |
+         rm -rf /opt/ghc
+         df -h
+    displayName: Manage disk space
+
+  # configure qemu binfmt-misc running.  This allows us to run docker containers
+  # embedded qemu-static
+  - script: |
+      docker run --rm --privileged multiarch/qemu-user-static:register --reset --credential yes
+      ls /proc/sys/fs/binfmt_misc/
+    condition: not(startsWith(variables['CONFIG'], 'linux_64'))
+    displayName: Configure binfmt_misc
+
+  - script: |
+        export CI=azure
+        export GIT_BRANCH=$BUILD_SOURCEBRANCHNAME
+        export FEEDSTOCK_NAME=$(basename ${BUILD_REPOSITORY_NAME})
+        .scripts/run_docker_build.sh
+    displayName: Run docker build
+    env:
+      BINSTAR_TOKEN: $(BINSTAR_TOKEN)

.azure-pipelines/azure-pipelines-osx.yml

@@ -0,0 +1,26 @@
+# This file was generated automatically from conda-smithy. To update this configuration,
+# update the conda-forge.yml and/or the recipe/meta.yaml.
+# -*- mode: yaml -*-
+
+jobs:
+- job: osx
+  pool:
+    vmImage: macOS-10.15
+  strategy:
+    matrix:
+      osx_64_c_compiler_version10cuda_compiler_versionNonecxx_compiler_version10:
+        CONFIG: osx_64_c_compiler_version10cuda_compiler_versionNonecxx_compiler_version10
+        UPLOAD_PACKAGES: 'True'
+  timeoutInMinutes: 360
+
+  steps:
+  # TODO: Fast finish on azure pipelines?
+  - script: |
+      export CI=azure
+      export OSX_FORCE_SDK_DOWNLOAD="1"
+      export GIT_BRANCH=$BUILD_SOURCEBRANCHNAME
+      export FEEDSTOCK_NAME=$(basename ${BUILD_REPOSITORY_NAME})
+      ./.scripts/run_osx_build.sh
+    displayName: Run OSX build
+    env:
+      BINSTAR_TOKEN: $(BINSTAR_TOKEN)

.azure-pipelines/azure-pipelines-win.yml

@@ -0,0 +1,103 @@
+# This file was generated automatically from conda-smithy. To update this configuration,
+# update the conda-forge.yml and/or the recipe/meta.yaml.
+# -*- mode: yaml -*-
+
+jobs:
+- job: win
+  pool:
+    vmImage: vs2017-win2016
+  strategy:
+    matrix:
+      win_64_cuda_compiler_versionNone:
+        CONFIG: win_64_cuda_compiler_versionNone
+        UPLOAD_PACKAGES: 'True'
+  timeoutInMinutes: 360
+  variables:
+    CONDA_BLD_PATH: D:\\bld\\
+
+  steps:
+    - script: |
+        choco install vcpython27 -fdv -y --debug
+      condition: contains(variables['CONFIG'], 'vs2008')
+      displayName: Install vcpython27.msi (if needed)
+
+    # Cygwin's git breaks conda-build. (See https://github.com/conda-forge/conda-smithy-feedstock/pull/2.)
+    # - script: rmdir C:\cygwin /s /q
+    #   continueOnError: true
+
+    - powershell: |
+        Set-PSDebug -Trace 1
+
+        $batchcontent = @"
+        ECHO ON
+        SET vcpython=C:\Program Files (x86)\Common Files\Microsoft\Visual C++ for Python\9.0
+
+        DIR "%vcpython%"
+
+        CALL "%vcpython%\vcvarsall.bat" %*
+        "@
+
+        $batchDir = "C:\Program Files (x86)\Common Files\Microsoft\Visual C++ for Python\9.0\VC"
+        $batchPath = "$batchDir" + "\vcvarsall.bat"
+        New-Item -Path $batchPath -ItemType "file" -Force
+
+        Set-Content -Value $batchcontent -Path $batchPath
+
+        Get-ChildItem -Path $batchDir
+
+        Get-ChildItem -Path ($batchDir + '\..')
+
+      condition: contains(variables['CONFIG'], 'vs2008')
+      displayName: Patch vs2008 (if needed)
+
+    - task: CondaEnvironment@1
+      inputs:
+        packageSpecs: 'python=3.6 conda-build conda "conda-forge-ci-setup=3" pip' # Optional
+        installOptions: "-c conda-forge"
+        updateConda: true
+      displayName: Install conda-build and activate environment
+
+    - script: set PYTHONUNBUFFERED=1
+      displayName: Set PYTHONUNBUFFERED
+
+    # Configure the VM
+    - script: |
+        call activate base
+        setup_conda_rc .\ ".\recipe" .\.ci_support\%CONFIG%.yaml
+      displayName: conda-forge CI setup
+
+    # Configure the VM.
+    - script: |
+        set "CI=azure"
+        call activate base
+        run_conda_forge_build_setup
+      displayName: conda-forge build setup
+    
+
+    # Special cased version setting some more things!
+    - script: |
+        call activate base
+        conda.exe build "recipe" -m .ci_support\%CONFIG%.yaml
+      displayName: Build recipe (vs2008)
+      env:
+        VS90COMNTOOLS: "C:\\Program Files (x86)\\Common Files\\Microsoft\\Visual C++ for Python\\9.0\\VC\\bin"
+        PYTHONUNBUFFERED: 1
+      condition: contains(variables['CONFIG'], 'vs2008')
+
+    - script: |
+        call activate base
+        conda.exe build "recipe" -m .ci_support\%CONFIG%.yaml
+      displayName: Build recipe
+      env:
+        PYTHONUNBUFFERED: 1
+      condition: not(contains(variables['CONFIG'], 'vs2008'))
+
+    - script: |
+        set "GIT_BRANCH=%BUILD_SOURCEBRANCHNAME%"
+        set "FEEDSTOCK_NAME=%BUILD_REPOSITORY_NAME:*/=%"
+        call activate base
+        upload_package  .\ ".\recipe" .ci_support\%CONFIG%.yaml
+      displayName: Upload package
+      env:
+        BINSTAR_TOKEN: $(BINSTAR_TOKEN)
+      condition: and(succeeded(), not(eq(variables['UPLOAD_PACKAGES'], 'False')))

.ci_support/README

@@ -0,0 +1 @@
+This file is automatically generated by conda-smithy.  To change any matrix elements, you should change conda-smithy's input conda_build_config.yaml and re-render the recipe, rather than editing these files directly.

.ci_support/linux_64_c_compiler_version7cuda_compiler_version10.0cxx_compiler_version7.yaml

@@ -0,0 +1,51 @@
+boost:
+- 1.72.0
+boost_cpp:
+- 1.72.0
+c_compiler:
+- gcc
+c_compiler_version:
+- '7'
+channel_sources:
+- conda-forge,defaults
+channel_targets:
+- conda-forge main
+cuda_compiler:
+- nvcc
+cuda_compiler_version:
+- '10.0'
+cxx_compiler:
+- gxx
+cxx_compiler_version:
+- '7'
+docker_image:
+- condaforge/linux-anvil-cuda:10.0
+fftw:
+- '3'
+hdf5:
+- 1.10.5
+pin_run_as_build:
+  boost:
+    max_pin: x.x.x
+  boost-cpp:
+    max_pin: x.x.x
+  fftw:
+    max_pin: x
+  python:
+    min_pin: x.x
+    max_pin: x.x
+  qt:
+    max_pin: x.x
+python:
+- 3.6.* *_cpython
+- 3.7.* *_cpython
+- 3.8.* *_cpython
+qt:
+- '5.12'
+target_platform:
+- linux-64
+zip_keys:
+- - c_compiler_version
+  - cxx_compiler_version
+- - cuda_compiler_version
+  - docker_image

.ci_support/linux_64_c_compiler_version7cuda_compiler_version10.1cxx_compiler_version7.yaml

@@ -0,0 +1,51 @@
+boost:
+- 1.72.0
+boost_cpp:
+- 1.72.0
+c_compiler:
+- gcc
+c_compiler_version:
+- '7'
+channel_sources:
+- conda-forge,defaults
+channel_targets:
+- conda-forge main
+cuda_compiler:
+- nvcc
+cuda_compiler_version:
+- '10.1'
+cxx_compiler:
+- gxx
+cxx_compiler_version:
+- '7'
+docker_image:
+- condaforge/linux-anvil-cuda:10.1
+fftw:
+- '3'
+hdf5:
+- 1.10.5
+pin_run_as_build:
+  boost:
+    max_pin: x.x.x
+  boost-cpp:
+    max_pin: x.x.x
+  fftw:
+    max_pin: x
+  python:
+    min_pin: x.x
+    max_pin: x.x
+  qt:
+    max_pin: x.x
+python:
+- 3.6.* *_cpython
+- 3.7.* *_cpython
+- 3.8.* *_cpython
+qt:
+- '5.12'
+target_platform:
+- linux-64
+zip_keys:
+- - c_compiler_version
+  - cxx_compiler_version
+- - cuda_compiler_version
+  - docker_image

.ci_support/linux_64_c_compiler_version7cuda_compiler_version10.2cxx_compiler_version7.yaml

@@ -0,0 +1,51 @@
+boost:
+- 1.72.0
+boost_cpp:
+- 1.72.0
+c_compiler:
+- gcc
+c_compiler_version:
+- '7'
+channel_sources:
+- conda-forge,defaults
+channel_targets:
+- conda-forge main
+cuda_compiler:
+- nvcc
+cuda_compiler_version:
+- '10.2'
+cxx_compiler:
+- gxx
+cxx_compiler_version:
+- '7'
+docker_image:
+- condaforge/linux-anvil-cuda:10.2
+fftw:
+- '3'
+hdf5:
+- 1.10.5
+pin_run_as_build:
+  boost:
+    max_pin: x.x.x
+  boost-cpp:
+    max_pin: x.x.x
+  fftw:
+    max_pin: x
+  python:
+    min_pin: x.x
+    max_pin: x.x
+  qt:
+    max_pin: x.x
+python:
+- 3.6.* *_cpython
+- 3.7.* *_cpython
+- 3.8.* *_cpython
+qt:
+- '5.12'
+target_platform:
+- linux-64
+zip_keys:
+- - c_compiler_version
+  - cxx_compiler_version
+- - cuda_compiler_version
+  - docker_image

.ci_support/linux_64_c_compiler_version7cuda_compiler_version9.2cxx_compiler_version7.yaml

@@ -0,0 +1,51 @@
+boost:
+- 1.72.0
+boost_cpp:
+- 1.72.0
+c_compiler:
+- gcc
+c_compiler_version:
+- '7'
+channel_sources:
+- conda-forge,defaults
+channel_targets:
+- conda-forge main
+cuda_compiler:
+- nvcc
+cuda_compiler_version:
+- '9.2'
+cxx_compiler:
+- gxx
+cxx_compiler_version:
+- '7'
+docker_image:
+- condaforge/linux-anvil-cuda:9.2
+fftw:
+- '3'
+hdf5:
+- 1.10.5
+pin_run_as_build:
+  boost:
+    max_pin: x.x.x
+  boost-cpp:
+    max_pin: x.x.x
+  fftw:
+    max_pin: x
+  python:
+    min_pin: x.x
+    max_pin: x.x
+  qt:
+    max_pin: x.x
+python:
+- 3.6.* *_cpython
+- 3.7.* *_cpython
+- 3.8.* *_cpython
+qt:
+- '5.12'
+target_platform:
+- linux-64
+zip_keys:
+- - c_compiler_version
+  - cxx_compiler_version
+- - cuda_compiler_version
+  - docker_image