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AGN Triggering #2

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merged 108 commits into from
May 18, 2023
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a3672d8
Added magnetic tower, agn triggering
forrestglines Sep 17, 2021
3efae1d
Finish rebase by updating input files
pgrete Sep 20, 2021
49cd19d
Small changes
Oct 18, 2021
664c9bf
Fixed cluster_hydro_agn_feedback python
forrestglines Oct 19, 2021
129e6b6
Changed to parthenon/develop
forrestglines Oct 19, 2021
0f449b4
Merge branch 'main' into forrestglines/cluster_agn_triggering
Oct 23, 2021
469545b
Fixed hydro feedback test for Parthenon develop
Nov 29, 2021
145dd3f
Fixed final output in regression tests
Nov 29, 2021
7e203bf
Fixed magnetic tower ctest
Dec 7, 2021
67a9f3a
Zero masking divB when B^2==0
Dec 10, 2021
c7733f1
Fixed Cluster restarts
Dec 13, 2021
cc17cfb
Cooling table T floor enforced
Dec 13, 2021
a8574f3
WIP Adding AGN triggering to history
Dec 26, 2021
26550e7
Fixed std::max in tabular_cooling
Dec 26, 2021
37aa08c
Debugging statements for tabular cooling
Jan 10, 2022
a24cc21
Bug fixes in tabular cooling
May 16, 2022
a283abb
Bug fixes in AGN triggering
May 16, 2022
c5453a8
Bug fixes in AGN Feedback
May 16, 2022
84b5340
Merge branch 'main' into forrestglines/cluster_agn_triggering
May 17, 2022
2a73119
Merge branch 'main' into forrestglines/cluster_agn_triggering
May 19, 2022
c3e2354
AddParam fixes for upstream changes
Jun 1, 2022
631343b
Fixed bug in jet precession
Jun 17, 2022
b9d1f98
Formatting
forrestglines Jun 17, 2022
8f4b52c
Fixed AGN Triggering Mode in history dumps
Jul 19, 2022
8b78940
Removed DEBUGGING statements
Jul 19, 2022
0398a6b
Fixed unyt unit error in testing
Oct 10, 2022
5bfffd0
Hack for tabular_cooling on DeltaGPUs
Oct 11, 2022
b2142c0
Merge branch 'main' into forrestglines/cluster_agn_triggering
pgrete Oct 20, 2022
82276e6
Fixed MPI Reduction error for magnetized AGN jets
forrestglines Nov 15, 2022
84d0a7f
Merge branch 'main' into forrestglines/cluster_agn_triggering
forrestglines Nov 15, 2022
17d58b6
Consolidated EOS ConsToPrim Functions
forrestglines Nov 15, 2022
64411ef
cpp-py-formatter
Nov 15, 2022
0d9e6e5
Cleanup inputs, move cooling tables
forrestglines Nov 15, 2022
4d53adf
Cooling table quick-fixes to run sims
Dec 13, 2022
aff45d5
Merge branch 'main' into forrestglines/cluster_agn_triggering
pgrete Jan 3, 2023
a671f92
Merge branch 'main' into forrestglines/cluster_agn_triggering
pgrete Jan 4, 2023
9dce87b
Merge branch 'forrestglines/cluster_agn_triggering' of github.com:par…
Jan 5, 2023
604d2da
Cleaned up cooling cfl hack
Jan 5, 2023
8d537bb
Thermal feedback fixes, Bondi fixes
forrestglines Jan 6, 2023
889efa0
WIP docs for Clusters
forrestglines Jan 6, 2023
b0abe6a
Adding equations to cluster docs
forrestglines Jan 9, 2023
08ae6b3
Fix copyrights for cluster pgen
forrestglines Jan 9, 2023
a0f3acd
Added Mathews BCG equation
forrestglines Jan 9, 2023
843e095
Fixed Mathews BCG profile to match reference
forrestglines Jan 9, 2023
e7ada14
Added citations to cluster docs
forrestglines Jan 9, 2023
d694aca
Fixing formatting issues in cluster.md
forrestglines Jan 9, 2023
21ee06c
Added ipython notebook for generating cluster inputs
Jan 10, 2023
436da89
Cleaned up cluster notebook
Jan 10, 2023
446a429
HACK disable mass injection with thermal feedback
Jan 10, 2023
cd38751
Added optional AGN feedback mass fractions
Jan 11, 2023
2e73cbc
Moved gnat-sternberg.cooling
Jan 26, 2023
9d42b78
Fixed Bondi Accretion mass removal
forrestglines Jan 26, 2023
d3785ed
Comments+Clarifications
forrestglines Jan 31, 2023
812698e
Fixed magnetic tower density bug
forrestglines Feb 1, 2023
1eb789e
Added Prim update to AGN Hydro feedback
forrestglines Feb 1, 2023
288a1de
Removed Mathews BCG gravity, added density functions
forrestglines Feb 1, 2023
bdb4409
Added SNIA Feedback (no docs nor regression tests)
forrestglines Feb 7, 2023
12c2864
Added SNIA feedback to docs and cluster input generator
forrestglines Feb 7, 2023
6b22174
Added optional initial uniform B field
forrestglines Feb 7, 2023
8a8ae5f
Add optional dipole magnetic field
forrestglines Mar 14, 2023
5470811
Streamlined cluster_utils mass adding funcs
forrestglines Mar 28, 2023
ff56cc9
Fixed number of hydro AGN feedback tests
forrestglines Mar 28, 2023
1cc0836
Fixed more add mass funcs
forrestglines Mar 28, 2023
45e1008
Clarified HSE r-sampling parameter, removed maxdr
forrestglines Mar 28, 2023
0d619b2
Removed AGN triggering reductions from HST
forrestglines Mar 28, 2023
3e1ad0c
Removed defunct comment
forrestglines Mar 28, 2023
5e69a58
Avoid implicit casting of sign_jet
forrestglines Mar 28, 2023
b86514d
Removed defunct parameters from notebooks
forrestglines Mar 28, 2023
e3d4733
cpp-py-formatter
Mar 28, 2023
6348736
Removed defunct `use_scratch`
forrestglines Mar 28, 2023
69bb56a
Merge branch 'main' into forrestglines/cluster_agn_triggering
forrestglines Mar 28, 2023
6a6226a
Disable SNIA feedback in cluster tests
forrestglines Mar 28, 2023
f7c70e3
cpp-py-formatter
Mar 28, 2023
f934f93
Fixed bug in AGN power history output
forrestglines Mar 29, 2023
2bbdd40
Fixed non-testing of hydro AGN feedback (still broken)
forrestglines Mar 29, 2023
c1373d6
cpp-py-formatter
Mar 30, 2023
1d07879
Fixed some coordinate issues in hydro_agn_feedback test
forrestglines Mar 30, 2023
40cecc0
Fixed bugs in jet coords, hydro AGN feedback
forrestglines Mar 30, 2023
d2a2873
Fixed coordinates in magnetic tower test
forrestglines Mar 30, 2023
311297a
cpp-py-formatter
Mar 30, 2023
be79431
Merge remote-tracking branch 'origin/main' into forrestglines/cluster…
pgrete Apr 10, 2023
6ab7a65
Cosmetic changes and enabling MPI CI for cluster tests
pgrete Apr 10, 2023
69ed146
Dont cool below the lower end of the cooling table
pgrete Apr 10, 2023
105d48f
Use Kokkos reductions
pgrete Apr 10, 2023
92be2c1
Added checks for zero length scales, zero radii
forrestglines Apr 10, 2023
819c9fe
Add comment on theta for r=0 edge case in coord trans
pgrete Apr 10, 2023
56d8dc8
Fix temperature with kinetic feedback
forrestglines Apr 12, 2023
7153b84
Added jet temperature and/or velocity
forrestglines Apr 25, 2023
5d59d7e
Removing triggered gas conserves M,E
forrestglines Apr 25, 2023
1339a73
cpp-py-formatter
Apr 25, 2023
57660d3
Updated documentation for new jet parameters
forrestglines Apr 25, 2023
115c94a
Fixed compute jet temp from jet velocity
forrestglines May 2, 2023
ad9a552
Reverted triggering changes
forrestglines May 2, 2023
b65b8d9
Fixed jet temperature and velocity check
forrestglines May 2, 2023
b03243c
Merge branch 'main' into forrestglines/cluster_agn_triggering
pgrete May 5, 2023
15cc60d
Fix typo
pgrete May 5, 2023
46ed7ac
Merge branch 'main' into forrestglines/cluster_agn_triggering
pgrete May 9, 2023
8bdcd26
Update var names
pgrete May 9, 2023
9ec261b
Fix outdated magnetic field var names
pgrete May 9, 2023
bf69490
Fixed kinetic jet lower temp check when DEBUG
forrestglines May 15, 2023
d376c63
Use mbar_over_kb for kinetic jet temp
forrestglines May 15, 2023
1044288
cpp-py-formatter
May 15, 2023
2906f85
Added header comments to cluster testing inputs
forrestglines May 15, 2023
827c636
Can change device mem in cluster notebook
forrestglines May 15, 2023
f1c1d8b
Jupyter notebbok with Precessing jet coord math
forrestglines May 15, 2023
fc18372
Fixed AGN accretion to remove gas from entire grid
forrestglines May 15, 2023
01a9fc5
Merge branch 'forrestglines/cluster_agn_triggering' of github.com:par…
forrestglines May 15, 2023
d8d654f
cpp-py-formatter
May 15, 2023
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4 changes: 4 additions & 0 deletions .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -37,3 +37,7 @@ compile_commands.json

# CMake Test files
Testing

# generate_cluster_input.ipynb files
inputs/cluster/generate_cluster_input.ipynb
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inputs/cluster/my_cluster.input
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