Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

bump repo2docker to 0.11 #130

Open
wants to merge 1 commit into
base: master
Choose a base branch
from
Open

bump repo2docker to 0.11 #130

wants to merge 1 commit into from

Conversation

scottyhq
Copy link
Member

@scottyhq scottyhq commented Feb 7, 2020

trying this again with new package versions

@scottyhq
Copy link
Member Author

scottyhq commented Feb 12, 2020

pangeo-notebook build failing with lots of conda package compatibility messages ultimately failing with:

Some log outputs:

Warning: you have pip-installed dependencies in your environment file, but you do not list pip itself as one of your conda dependencies.  Conda may not use the correct pip to install your packages, and they may end up in the wrong place.  Please add an explicit pip dependency.  I'm adding one for you, but still nagging you.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... 
Finding conflicts:   0%|          | 0/569 [00:00<?, ?it/s]
Examining nomkl:   0%|          | 0/569 [00:00<?, ?it/s]  
Examining harfbuzz:   0%|          | 1/569 [00:00<00:00, 2906.66it/s]
Examining nodejs:   0%|          | 2/569 [00:00<00:00, 3501.09it/s] 

UnsatisfiableError: The following specifications were found to be incompatible with a past
explicit spec that is not an explicit spec in this operation (dask):
  - dask-ml -> dask[version='>=0.18.2|>=1.0.0']

The following specifications were found to be incompatible with each other:
Package numpy conflicts for:
seaborn -> numpy[version='>=1.13.3|>=1.9.3']
Traceback (most recent call last):
  File "/usr/local/bin/r2d_overlay.py", line 147, in <module>
    main()
  File "/usr/local/bin/r2d_overlay.py", line 141, in main
    build()
  File "/usr/local/bin/r2d_overlay.py", line 109, in build
    ['/bin/bash', '-c', command], preexec_fn=applicator._pre_exec
  File "/srv/conda/envs/notebook/lib/python3.7/subprocess.py", line 363, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/bin/bash', '-c', 'conda env update -p /srv/conda/envs/notebook -f /home/jovyan/.onbuild-child/binder/environment.yml']' returned non-zero exit status 1.
The command '/bin/sh -c /usr/local/bin/r2d_overlay.py build' returned a non-zero code: 1

The main change I think from repo2docker 0.10 to 0.11 is conda going from 4.7.10 to 4.7.12 jupyterhub/repo2docker#802

Not planning on sorting this out until #125 is sorted

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant