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    18 repositories

    • SPRAWL

      Public
      Subcellular RNA Ranked Statistics
      Jupyter Notebook
      •
      MIT License
      •0•3•1•0•Updated Dec 10, 2024Dec 10, 2024

    • SPLASH-plus

      Public
      Nextflow
      •
      MIT License
      •0•3•0•0•Updated Nov 5, 2024Nov 5, 2024

    • SPLASH

      Public
      Python
      •
      MIT License
      •4•42•1•0•Updated Sep 17, 2024Sep 17, 2024

    • SICILIAN

      Public
      Python
      •
      GNU General Public License v2.0
      •11•19•10•2•Updated Jun 7, 2024Jun 7, 2024

    • SPLASH_supervised_test

      Public
      The repository contains the script for performing GLM with lasso-based multinomial regression
      R
      •1•1•0•0•Updated Apr 23, 2024Apr 23, 2024

    • sequence_features

      Public
      A repository to store scripts describing features such as repeats and editing in nucleotide sequences.
      Jupyter Notebook
      •0•0•0•0•Updated Mar 14, 2024Mar 14, 2024

    • bioinformatics-utils

      Public
      Repository to share useful scripts for bioinformatics and SPLASH post-processing
      Python
      •0•0•0•0•Updated Mar 8, 2024Mar 8, 2024

    • compactor

      Public
      Implementation of compactors used in Tabula Sapiens Smart-Seq 2 analysis.
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 8, 2024Jan 8, 2024

    • blast_multiprocessing

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Nov 1, 2023Nov 1, 2023

    • SpliZ

      Public
      Nextflow implementation of SpliZ
      Python
      •
      MIT License
      •7•13•7•1•Updated Aug 21, 2023Aug 21, 2023

    • sample_target_heatmaps

      Public
      A Python script to perform SATC unpacking and to plot heatmaps for an input anchor set.
      Python
      •0•0•0•0•Updated Jun 6, 2023Jun 6, 2023

    • compactor_pfam_rfam

      Public
      A python script, 2 under-the-hood bash scripts, and a Sherlock sbatch to run Rfam and Pfam on Adam Gudys's compactor tabular output, then to merge the best Rfam and Pfam hit for each compactor.
      Python
      •0•0•0•0•Updated Mar 16, 2023Mar 16, 2023

    • .github

      Public
      special repo that hosts README for this Gitub Organziation
      0•0•0•0•Updated Oct 20, 2022Oct 20, 2022

    • ReadZS

      Public
      The Read Z-score (ReadZS) is a metric that summarizes the transcriptional state of a gene in a single cell.
      Nextflow
      •
      MIT License
      •4•4•2•0•Updated Sep 30, 2022Sep 30, 2022

    • nf-sicilian

      Public
      Nextflow
      •
      MIT License
      •4•3•5•1•Updated Apr 5, 2022Apr 5, 2022

    • Equivalent-Junctions

      Public
      Python
      •2•4•0•0•Updated Aug 21, 2019Aug 21, 2019

    • MACHETE

      Public
      R
      •3•2•3•1•Updated Nov 21, 2018Nov 21, 2018

    • KNIFE

      Public
      Known and Novel IsoForm Explorer. Statistically based splicing detection for circular and linear isoforms
      Python
      •23•0•0•0•Updated Apr 14, 2017Apr 14, 2017