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@eQTL-Catalogue eQTL Catalogue

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    13 repositories

    • eQTL-Catalogue-website

      Public
      Get up and running with EBI-themed Jekyll fast (rolled with gh-pages in mind, clone/fork suggested)
      HTML
      •
      Other
      •8•1•0•0•Updated Feb 1, 2025Feb 1, 2025

    • qtlmap

      Public
      Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
      R
      •
      MIT License
      •13•46•7•0•Updated Jan 20, 2025Jan 20, 2025

    • rnaseq

      Public
      RNA-seq quantification pipeline used by the eQTL Catalogue
      Nextflow
      •
      MIT License
      •7•5•0•1•Updated Dec 9, 2024Dec 9, 2024

    • eQTL-Catalogue-resources

      Public
      HTML
      •35•46•1•1•Updated Oct 30, 2024Oct 30, 2024

    • eQTL-SumStats

      Public
      eQTL Catalogue Summary Statistics
      Python
      •1•3•8•12•Updated Jul 9, 2024Jul 9, 2024

    • qcnorm

      Public
      This pipeline will run QC measures of both genotype and phenotype data and will normalise quantified phenotypes
      Nextflow
      •
      MIT License
      •4•5•3•0•Updated Jan 15, 2024Jan 15, 2024

    • genimpute

      Public
      Portable genotype imputation pipeline used by the eQTL Catalogue
      Nextflow
      •
      Apache License 2.0
      •2•5•0•0•Updated Jan 3, 2024Jan 3, 2024

    • federated-analysis

      Public
      Python
      •0•0•0•0•Updated May 26, 2022May 26, 2022

    • genotype_qc

      Public archive
      Workflows for performing genotype QC before and after imputation
      Nextflow
      •
      Apache License 2.0
      •0•4•0•0•Updated Dec 17, 2021Dec 17, 2021

    • susie-workflow

      Public archive
      Nextflow workflow for applying SuSiE finemapping model to a large number of molecular QTLs
      R
      •
      Apache License 2.0
      •3•8•0•0•Updated Dec 17, 2021Dec 17, 2021

    • colocalisation

      Public
      This repo contains a nextflow pipeline to do colocalisation analysis of QTLs against GWASs
      Nextflow
      •
      Apache License 2.0
      •4•2•0•0•Updated Apr 28, 2021Apr 28, 2021

    • eQTL-sumstats-file-validator

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 14, 2020Apr 14, 2020

    • qtl_norm_qc

      Public
      This repo contains necessary scripts to run Quality Control (QC) and Normalisation on phenotype count matrices generated by rnaseq pipeline.
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 29, 2020Jan 29, 2020