Repositories list

• Cyano_Gliding_ImageAnalysis_and_Model

  Public
  Files associated with cyanobacteria gliding motility analysis using image processing and biophysical model

  Jupyter Notebook

  •0•0•0•0•Updated May 10, 2024May 10, 2024

• STRONG_pipeline_avon

  Public
  Shell

  •1•0•0•0•Updated Aug 3, 2023Aug 3, 2023

• ThT_CellularDistribution_ImagesAndModel

  Public
  A simple model describing the membrane-potential dependent distribution of a cationic dye and subsequent binding of the dye in the cell

  MATLAB

  •0•0•0•0•Updated Feb 1, 2023Feb 1, 2023

• CoSubstrateDynamics

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Jan 25, 2023Jan 25, 2023

• ChemChaste

  Public
  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •2•1•0•0•Updated Apr 1, 2022Apr 1, 2022

• MetQy

  Public
  Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)

  data-miningmetabolismr-package+ 1kegg

  R

  •

  Other

  •9•18•5•0•Updated Jan 21, 2022Jan 21, 2022

• ModellingApHProbe

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jul 7, 2021Jul 7, 2021

• FBAhv

  Public
  FBAhv: FBA analysis of host-virus metabolic model (read related publication at: https://www.life-science-alliance.org/content/4/1/e202000869)

  cobrapymetabolic-modelsfba

  Python

  •

  BSD 2-Clause "Simplified" License

  •1•1•0•0•Updated Oct 2, 2020Oct 2, 2020

• evolutionOfShapes

  Public
  Simple processing script for shape evolution - user is selective force

  Processing

  •0•0•0•0•Updated Jun 29, 2020Jun 29, 2020

• micodymora

  Public
  Simulation framework for microbial population dynamics (read related publication here: https://royalsocietypublishing.org/doi/pdf/10.1098/rsif.2020.0053)

  Python

  •2•4•0•0•Updated Mar 25, 2020Mar 25, 2020

• biojazz

  Public
  Evolve and Design Biochemical Reaction Networks (read related publication here: https://pubmed.ncbi.nlm.nih.gov/26101250/)

  Perl

  •

  GNU General Public License v3.0

  •3•1•0•0•Updated Jun 18, 2018Jun 18, 2018

• chemotaxis-games

  Public
  This repository contains simple scripts which can be used explore chemotaxis strategies used by bacteria.

  Processing

  •

  MIT License

  •1•0•0•0•Updated Jun 15, 2018Jun 15, 2018

• oss-lab.github.io

  Public
  Webpage of code resources from OSS lab @ University of Warwick

  CSS

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 24, 2017Apr 24, 2017

• bistability

  Public
  Project about bistability in signalling networks

  Mathematica

  •0•0•0•0•Updated Feb 3, 2016Feb 3, 2016

• scaffoldTitration

  Public
  To study different network motifs

  Mathematica

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Aug 13, 2015Aug 13, 2015

• adaptiveNetworks

  Public
  study of adaptive networks

  MATLAB

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Aug 11, 2015Aug 11, 2015

• fitnessFunctions

  Public
  Plotting fitness functions for BioJazz models

  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Feb 5, 2015Feb 5, 2015

• anc

  Public
  Mirror of ANC code

  Perl

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Oct 29, 2013Oct 29, 2013

• facile

  Public
  Mirror of facile code

  Perl

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Oct 16, 2013Oct 16, 2013