Repositories list

• chaste-workshop-materials-2025

  Public
  Materials for the 2025 Chaste workshop in Nottingham

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

• chaste-docker

  Public
  Docker images for Chaste

  windowsmacoslinux+ 6dockerdockerfilesimulationdocker-containerdocker-imagechaste

  Dockerfile

  •

  MIT License

  •9•10•4•1•Updated Jan 9, 2025Jan 9, 2025

• ImmersedBoundaryWorkshop

  Public
  Chaste / Oxford 2023 - Immersed Boundary Workshop Code

  C++

  •0•0•0•0•Updated Jan 9, 2025Jan 9, 2025

• IntroToChasteCpp2025

  Public
  An introduction to using Chaste from C++ for the 2025 Nottingham Workshop

  C++

  •2•0•0•0•Updated Jan 9, 2025Jan 9, 2025

• PyChaste

  Public
  A Python Wrapper for Chaste

  C++

  •

  Other

  •0•2•8•2•Updated Jan 8, 2025Jan 8, 2025

• memory-testing

  Public
  Generated files from the memory testing CI

  HTML

  •0•0•0•0•Updated Jan 8, 2025Jan 8, 2025

• profiling-gprof

  Public
  Generated files from profiling with GProf on CI

  HTML

  •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

• Chaste

  Public
  Chaste - Cancer Heart And Soft Tissue Environment - main public repository.

  c-plus-pluscomputational-biologyelectrophysiology+ 7mathematical-modellinghpc-applicationscancer-researchmathematical-biologydevelopmental-biologycell-basedphysiology

  C++

  •

  Other

  •58•125•45•9•Updated Jan 7, 2025Jan 7, 2025

• OpenVT

  Public
  OpenVT reference model implementations in Chaste

  C++

  •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

• doxygen-latest

  Public
  GitHub pages site containing doxygen generated from the latest commit on develop

  HTML

  •0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

• dependency-modules

  Public
  Environment modules for Chaste dependencies

  Shell

  •

  Other

  •0•1•2•2•Updated Dec 13, 2024Dec 13, 2024

• gpu-benchmark-2024

  Public
  Cuda

  •0•0•0•0•Updated Dec 10, 2024Dec 10, 2024

• cppwg

  Public
  An automatic Python wrapper generator for C++ code.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •8•45•7•0•Updated Nov 26, 2024Nov 26, 2024

• doxygen-releases

  Public
  GitHub pages site containing static doxygen for individual releases

  HTML

  •0•0•0•0•Updated Oct 16, 2024Oct 16, 2024

• ApPredict

  Public
  Cardiac Action Potential Prediction (ApPredict) under drug-induced block of ion channels. This is a Chaste extension/bolt-on project.

  drug-discoveryelectrophysiologymathematical-modelling+ 5biophysicscardiacion-channeldrug-safetychaste

  C++

  •

  Other

  •4•7•3•0•Updated Sep 30, 2024Sep 30, 2024

• CellBasedComparison2017

  Public
  Code for the 2017 Cell Based Comparison paper https://doi.org/10.1371/journal.pcbi.1005387

  paper-tutorialmigrated-from-svn

  C++

  •1•0•0•0•Updated Sep 9, 2024Sep 9, 2024

• PerMedCoE

  Public
  PerMedCoE community benchmarking code for the Chaste project

  C++

  •1•2•0•0•Updated Jul 10, 2024Jul 10, 2024

• project_FunctionalCuration

  Public
  Git conversion of old SVN user project FunctionalCuration

  C++

  •0•0•0•0•Updated Jul 8, 2024Jul 8, 2024

• project_Wisc2013

  Public
  Git conversion of old SVN user project Wisc2013

  C++

  •0•0•0•0•Updated Jul 8, 2024Jul 8, 2024

• project_CardiacEpVerification

  Public
  Git conversion of old SVN user project CardiacEpVerification

  C++

  •0•0•0•0•Updated Jul 5, 2024Jul 5, 2024

• IntroToChasteCpp

  Public
  An introduction to using Chaste from C++

  C++

  •2•1•1•0•Updated May 9, 2024May 9, 2024

• project_DanieleM

  Public
  Git conversion of old SVN user project DanieleM

  C++

  •0•0•0•0•Updated May 2, 2024May 2, 2024

• project_PlosOne_mRNA

  Public
  Git conversion of old SVN user project PlosOne_mRNA

  MATLAB

  •0•0•0•0•Updated May 2, 2024May 2, 2024

• project_Plos2013

  Public
  Git conversion of old SVN user project Plos2013

  C++

  •0•0•0•0•Updated May 2, 2024May 2, 2024

• project_Plos2012

  Public
  Git conversion of old SVN user project Plos2012

  C++

  •0•0•0•0•Updated May 2, 2024May 2, 2024

• project_PNAS_PopulationOfModels

  Public
  Git conversion of old SVN user project PNAS_PopulationOfModels

  C++

  •0•0•0•0•Updated May 2, 2024May 2, 2024

• project_MouseLesion

  Public
  Git conversion of old SVN user project MouseLesion

  C++

  •0•0•0•0•Updated May 2, 2024May 2, 2024

• project_Harvey2015

  Public
  Git conversion of old SVN user project Harvey2015

  C++

  •0•0•0•0•Updated May 2, 2024May 2, 2024

• project_EpithelialFissionJtb2016

  Public
  Git conversion of old SVN user project EpithelialFissionJtb2016

  C++

  •0•0•0•0•Updated May 2, 2024May 2, 2024

• project_CoGNaC

  Public
  Git conversion of old SVN user project CoGNaC

  C++

  •0•0•0•0•Updated May 2, 2024May 2, 2024