Skip to content
@openproblems-bio

Open Problems in Single-Cell Analysis

Pinned Loading

  1. openproblems openproblems Public

    Formalizing and benchmarking open problems in single-cell genomics

    Shell 323 81

  2. website website Public

    Website hosted at https://openproblems.bio

    TeX 4 7

Repositories

Showing 10 of 35 repositories
  • task_cyto_batch_integration Public
    openproblems-bio/task_cyto_batch_integration’s past year of commit activity
    Shell 1 MIT 1 5 1 Updated Jan 28, 2025
  • task_perturbation_prediction Public

    A benchmark on predicting how small molecules change gene expression in different cell types.

    openproblems-bio/task_perturbation_prediction’s past year of commit activity
    Python 3 MIT 2 4 1 Updated Jan 28, 2025
  • task_batch_integration Public
    openproblems-bio/task_batch_integration’s past year of commit activity
    Python 1 MIT 2 4 1 Updated Jan 27, 2025
  • website Public

    Website hosted at https://openproblems.bio

    openproblems-bio/website’s past year of commit activity
    TeX 4 CC-BY-4.0 7 32 (1 issue needs help) 14 Updated Jan 27, 2025
  • task_dimensionality_reduction Public
    openproblems-bio/task_dimensionality_reduction’s past year of commit activity
    Python 0 MIT 1 5 1 Updated Jan 27, 2025
  • common_resources Public

    This repo contains common resources that can be used for OpenProblems v2 tasks.

    openproblems-bio/common_resources’s past year of commit activity
    Nextflow 0 MIT 1 1 1 Updated Jan 27, 2025
  • task_label_projection Public

    Automated cell type annotation from rich, labeled reference data

    openproblems-bio/task_label_projection’s past year of commit activity
    Python 0 MIT 0 1 1 Updated Jan 23, 2025
  • task_grn_inference Public
    openproblems-bio/task_grn_inference’s past year of commit activity
    Jupyter Notebook 3 1 0 0 Updated Jan 23, 2025
  • task_foundation_models Public
    openproblems-bio/task_foundation_models’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Jan 20, 2025
  • task_spatial_simulators Public

    Benchmarking spatial simulators

    openproblems-bio/task_spatial_simulators’s past year of commit activity
    R 0 MIT 0 0 1 Updated Jan 14, 2025
View all repositories

Top languages

Loading…

Most used topics

Loading…