Changing workflow file and moving runTestAndGenerateReports.m to test folder #50
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| name: MATLAB Tests and Coverage | |
| on: | |
| pull_request: | |
| branches: | |
| - '**' | |
| jobs: # jobs | |
| build: | |
| runs-on: self-hosted | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Clone COBRA Toolbox | |
| run: | | |
| git clone https://github.com/opencobra/cobratoolbox.git cobratoolbox | |
| - name: Run MATLAB tests and generate coverage | |
| run: | | |
| matlab -batch "run('cobratoolbox/initCobraToolbox.m'); diary('test_results.txt'); \ | |
| coverageFile = fullfile('coverage', 'coverage.xml'); \ | |
| mkdir('coverage'); \ | |
| run('cobratoolbox/test/runTestAndGenerateReport.m'); \ | |
| coverageResults = matlab.unittest.TestSuite.fromFile('cobratoolbox/test/testall_ghActions.m'); \ | |
| results = run(coverageResults); \ | |
| xmlwrite(coverageFile, results.generateCoverageReport('cobertura')); \ | |
| diary off;" | |
| - name: Upload Test Report | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-report | |
| path: test_results.txt | |
| - name: Upload Coverage Report to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| file: ./coverage/coverage.xml | |
| flags: unittests | |
| token: ${{ secrets.CODECOV_TOKEN }} # Add your Codecov token to the repo secrets |