TASK-5388 - Add AlphaMissense predictions#698

Open

jtarraga wants to merge 115 commits intodevelopfrom TASK-5388

+6,737-5,923

Commits on Dec 18, 2023

lib: download polygenic scores (PGS), #TASK-5406, #TASK-5387
jtarraga
committed

Commits on Dec 19, 2023

lib: update the build command to support PGS data, #TASK-5407, #TASK-5387
jtarraga
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lib: copy PGS version file from download to generated json directory, #TASK-5407, #TASK-5387
jtarraga
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lib: update the load command to support PGS data, #TASK-5410, #TASK-5387
jtarraga
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Commits on Dec 20, 2023

lib: update CellBase downloader to take into account the AlphaMissense predictions, #TASK-5418, #TASK-5388
jtarraga
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Commits on Dec 21, 2023

lib: update builder to build AlphaMissense predictions, #TASK-5419, #TASK-5388
jtarraga
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Commits on Dec 22, 2023

Commits on Jan 2, 2024

lib: add support for annotating using PGS, #TASK-5411, #TASK-5387
jtarraga
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Commits on Jan 3, 2024

Commits on Jan 5, 2024

Commits on Jan 10, 2024

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Commits on Jan 17, 2024

Commits on Jan 21, 2024

download: gwas catalog fixes
imedina
committed

Commits on Jan 29, 2024

lib: take into account the NumberFormatException, #TASK-5407, #TASK-5387
jtarraga
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Commits on Feb 2, 2024

Commits on Feb 7, 2024

Commits on Mar 1, 2024

Commits on Mar 7, 2024

Commits on Mar 8, 2024

Commits on Mar 22, 2024

lib: improve conservation downloader by updating versions from config file, adding log messages, removing hardcode filenames, sonnar issues,..., #TASK-5775, #TASK-5564
jtarraga
committed

Commits on Mar 28, 2024

lib: update regulation download manager, and the configuration file, to take into account the version for miRBase and miRTarBase, #TASK-5775, #TASK-5564
jtarraga
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Commits on Apr 3, 2024

Commits on Apr 4, 2024

lib: fix Gwas Catalog builder for clinical variants, #TASK-5776, #TASK-5564
jtarraga
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Commits on Apr 5, 2024

lib: refactor code by changing the DownloadProperties.URLProperties, #TASK-5775, #TASK-5564
jtarraga
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Commits on Apr 12, 2024

lib: update CellBase downloaders, #TASK-5775, #TASK-5564
jtarraga
committed

Commits on Apr 15, 2024

core: update CellBase configuration file, #TASK-5775, #TASK-5564
jtarraga
committed

Commits on Apr 19, 2024

Commits on Apr 22, 2024

Commits on Apr 23, 2024

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Commits on May 7, 2024

Commits on May 8, 2024