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更新新的zenodo repo
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ShixiangWang authored Nov 9, 2023
1 parent 9913ad9 commit f0f220b
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4 changes: 2 additions & 2 deletions R/load_data.R
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#' - `TCGA.organ`: TCGA organ data.
#' - `toil_info`: Toil hub information.
#'
#' **Remote datasets stored in [Zenodo](https://zenodo.org/record/8275549/)**:
#' **Remote datasets stored in [Zenodo](https://zenodo.org/record/10090632/)**:
#' - `pcawg_promoter_id`: PCAWG promoter identifiers.
#' - `transcript_identifier`: Common transcript identifiers.
#' - `ccle_expr_and_drug_response`: CCLE expression and drug response data.
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if (!file.exists(data_path)) {
# Download it to inst/extdata from zenodo
# Then load it
data_url <- file.path("https://zenodo.org/record/8275549/files", name2)
data_url <- file.path("https://zenodo.org/record/10090632/files", name2)
message("Loading data from remote: ", data_url, ", please wait...")
name <- FALSE
tryCatch(
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2 changes: 1 addition & 1 deletion docs/reference/load_data.html

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2 changes: 1 addition & 1 deletion inst/shinyapp/shiny-doc/datasets.md
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<center> <h2> Extra Datasets </h2> </center>

Extra datasets cleaned from UCSCXena hubs or references are deposited in [Zenodo repo](https://zenodo.org/record/8275549).
Extra datasets cleaned from UCSCXena hubs or references are deposited in [Zenodo repo](https://zenodo.org/record/10090632).

You can download them directly from the Zenodo repo or using `get_data()` function provided in UCSCXenaShiny R package.

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2 changes: 1 addition & 1 deletion man/load_data.Rd

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