Merge pull request #342 from lishensuo/master

change inst\shinyapp\helper figures to tencent cloud

inst/shinyapp/helper/add_signature.md

@@ -2,7 +2,7 @@
 - <font size="4">You can (1) set the basic signature information and (2) molecular formula, (3) calculate the signature value and add into **Custom metadata** (Data subtype) of Phenotype data (Data type) for analysis;</font>
 
 <p align="center">
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240114153109823.png" alt="image-20240114153109823"    width="700"  />
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/helper_add_signature.png" alt="helper_add_signature"    width="700"  />
 </p>
 
 ---

inst/shinyapp/helper/analyze_comp_1.md

@@ -12,7 +12,7 @@
 
 
 <p align="center">
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240114205231436.png" alt="image-20240114205231436"   width="700" />
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/helper_analyze_comp_1.png" alt="helper_analyze_comp_1"   width="700" />
 </p>
 
 ---

inst/shinyapp/helper/analyze_comp_2.md

@@ -12,7 +12,7 @@
 
 
 <p align="center">
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240114210002465.png" alt="image-20240114210002465"   width="700" />
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/helper_analyze_comp_2.png" alt="helper_analyze_comp_2"   width="700" />
 </p>
 
 ---

inst/shinyapp/helper/analyze_comp_3.md

@@ -11,7 +11,7 @@
 
 
 <p align="center">
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240114210214561.png" alt="image-20240114210214561"    width="700"/>
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures//helper_analyze_comp_3.png" alt="helper_analyze_comp_3"    width="700"/>
 </p>
 
 ---

inst/shinyapp/helper/analyze_cor_1.md

@@ -13,7 +13,7 @@
 
 
 <p align="center">
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240114195942891.png" alt="image-20240114195942891"   width="700"/>
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/helper_analyze_cor_1.png" alt="helper_analyze_cor_1"   width="700"/>
 </p>
 
 ---

inst/shinyapp/helper/analyze_cor_2.md

@@ -11,7 +11,7 @@
 > 3. "**Analyzed data(.csv)**": detailed correlation result.
 
 <p align="center">
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240114203517680.png" alt="image-20240114203517680"   width="700" />
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/helper_analyze_cor_2.png" alt="helper_analyze_cor_2"   width="700" />
 </p>
 
 ---

inst/shinyapp/helper/analyze_cor_3.md

@@ -11,7 +11,7 @@
 
 
 <p align="center">
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240114205442705.png" alt="image-20240114205442705"    width="700"/>
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/helper_analyze_cor_3.png" alt="helper_analyze_cor_3"    width="700"/>
 </p>
 
 ---

inst/shinyapp/helper/analyze_sur_1.md

@@ -18,7 +18,7 @@
 
 
 <p align="center">
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240114211733002.png" alt="image-20240114211733002" width="700"/>
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures//helper_analyze_sur_1.png" alt="helper_analyze_sur_1" width="700"/>
 </p>
 
 ---

inst/shinyapp/helper/analyze_sur_2.md

@@ -13,7 +13,7 @@
 > 3. "**Analyzed data(.csv)**": detailed correlation result.
 
 <p align="center">
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240114213653864.png" alt="image-20240114213653864" width="700"/>
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/helper_analyze_sur_2.png" alt="helper_analyze_sur_2" width="700"/>
 </p>
 
 ---

inst/shinyapp/helper/analyze_sur_3.md

@@ -15,7 +15,7 @@
 
 
 <p align="center">
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240114214546457.png" alt="image-20240114214546457" width="700"/>
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/helper_analyze_sur_3.png" alt="helper_analyze_sur_3" width="700"/>
 </p>
 
 ---

inst/shinyapp/helper/choose_samples.md

@@ -5,7 +5,7 @@
 
 
 <p align="center">
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240114144035472.png" alt="image-20240114144035472"   width="450"  />
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/helper_choose_samples_1.png" alt="helper_choose_samples_1"   width="450"  />
 </p>
 
 - <font size="4"> In "**exact filter**" module, you can execute detailed filter using multiple conditions for different phenotypes. </font>
@@ -23,7 +23,7 @@
 >    - For **numeric**  class, set ">" or "<" based on absolute values (min, max) or "%>" or "%<" based on percentile values (0,1).
 
 <p align="center">
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240114144419223.png" alt="image-20240114144419223"   width="700"  />
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/helper_choose_samples_2.png" alt="helper_choose_samples_2"   width="700"  />
 </p>
 
 

inst/shinyapp/helper/cross_gene.md

@@ -46,7 +46,7 @@
 
 
 
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240621164513902.png" alt="image-20240621164513902"   width="700"/>
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/helper_cross_gene.png" alt="helper_cross_gene"   width="700"/>
 
 
 

inst/shinyapp/helper/cross_pw.md

@@ -33,7 +33,7 @@
 
 
 
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240622145708792.png" alt="image-20240622145708792"  width="700"/>
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures//helper_cross_pw.png" alt="helper_cross_pw"  width="700"/>
 
 
 

inst/shinyapp/helper/custom_metadata.md

@@ -3,7 +3,7 @@
 
 
 <p align="center">
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240114150437151.png" alt="image-20240114150437151"  width="700"/>
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/helper_costom_metadata.png" alt="helper_costom_metadata"  width="700"/>
 </p>
 
 ---

inst/shinyapp/helper/data_origin.md

@@ -10,7 +10,7 @@
 >5. Select the aggregation method for calculating gene-level methylation. By default, the mean of the selected CpG sites will be calculated.
 
 <p align="center">
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240114135857453.png" alt="image-20240114135857453"  width="450" />
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/helper_data_origin.png" alt="helper_data_origin"  width="450" />
 </p>
 
 ---

inst/shinyapp/helper/get_batch_data.md

@@ -6,7 +6,7 @@
 > 3. In the "**File**" way, choose IDs by uploading an one-column file. You can download the example data to check the format requirements.
 
 <p align="center">
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240114170836444.png" alt="image-20240114170836444"   width="700"/>
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/helper_get_batch_data.png" alt="helper_get_batch_data"   width="700"/>
 </p>
 
 ---

inst/shinyapp/helper/get_batch_data_set_groups.md

@@ -20,7 +20,7 @@
 
 
 <p align="center">
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240114175257792.png" alt="image-20240114175257792" width="700"/>
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/helper_get_batch_data_set_groups.png" alt="helper_get_batch_data_set_groups" width="700"/>
 <p>
 
 ---

inst/shinyapp/helper/get_one_data.md

@@ -5,7 +5,7 @@
 
 
 <p align="center">
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240114161343441.png" alt="image-20240114161343441" width="700"/>
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/helper_get_one_data.png" alt="helper_get_one_data" width="700"/>
 </p>
 
 ---

inst/shinyapp/helper/set_groups.md

@@ -7,7 +7,7 @@
 
 
 <p align="center">
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240114171455542.png" alt="image-20240114171455542"  width="700"/>
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/helper_set_groups.png" alt="helper_set_groups"  width="700"/>
 </p>
 
 ---

inst/shinyapp/shiny-doc/intro_personal_pips.md

@@ -7,7 +7,7 @@
 
 
 <center>
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240708162416954.png" alt="image-20240413163342892"  style="zoom:50%";/>
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/helper_intro_personal_pips_1.png" alt="helper_intro_personal_pips_1"  style="zoom:50%";/>
 </center>
 
 
@@ -20,7 +20,7 @@
 
 
 <center>
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240413163712074.png" alt="image-20240413163712074" style="zoom:80%;" />
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/helper_intro_personal_pips_2.png" alt="helper_intro_personal_pips_2" style="zoom:80%;" />
 </center>
 
 

inst/shinyapp/shiny-doc/intro_quick_mods.md

@@ -7,7 +7,7 @@
 
 
 <center>
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240413111957810.png" alt="image-20240413111957810" style="zoom:50%;" />
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/helper_intro_quick_mods_1.png" alt="helper_intro_quick_mods_1" style="zoom:50%;" />
 </center>
 
 
@@ -18,7 +18,7 @@
 - <font size="5">The [dashboard](https://github.com/RinteRface/shinydashboardPlus)-based **box** layouts are adopted for simple and intuitive representation. The **left box** is usually for data selection and analytical parameters adjustment. The **right box** is usually for display of result plot and one **sidebar panel** can be pulled to adjust  visualization options and download results.</font>
 
 <center>
-<img src="https://raw.githubusercontent.com/lishensuo/images2/main/img01/image-20240413113535287.png" alt="image-20240413113535287" />
+<img src="https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/helper_intro_quick_mods_2.png" alt="helper_intro_quick_mods_2" />
 </center>
 
 ## 2. Molecular database