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fix: use file() function for blast_db parameter in UNTAR_BLAST_DB #1362

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fix: use file() function for blast_db parameter in UNTAR_BLAST_DB

fix: use file() function for blast_db parameter in UNTAR_BLAST_DB #1362

Run time

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Job Run time
Run pipeline with test data (24.04.2 | test | docker)
32m 54s
Run pipeline with test data (latest-everything | test | docker)
31m 13s
Test nanopore (24.04.2 | --gff false --freyja_depthcutoff 1 | docker)
22m 40s
Test nanopore (24.04.2 | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz --freyja_depthcutoff 1 | docker)
26m 44s
Test parameters (24.04.2 | --consensus_caller ivar | docker)
30m 34s
Test nanopore (24.04.2 | --input false --freyja_depthcutoff 1 | docker)
23m 49s
Test SISPA (24.04.2 | --gff false | docker)
22m 42s
Test parameters (24.04.2 | --variant_caller bcftools --consensus_caller ivar | docker)
30m 0s
Test nanopore (24.04.2 | --min_barcode_reads 10000 | docker)
4m 30s
Test SISPA (24.04.2 | --genome 'NC_045512.2' | docker)
24m 53s
Test parameters (24.04.2 | --skip_fastp --skip_pangolin | docker)
32m 54s
Test nanopore (24.04.2 | --min_guppyplex_reads 10000 | docker)
8m 43s
Test SISPA (latest-everything | --gff false | docker)
21m 7s
Test parameters (24.04.2 | --skip_variants | docker)
12m 31s
Test nanopore (24.04.2 | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --freyja_depthcutoff 1 | docker)
41m 56s
Test SISPA (latest-everything | --genome 'NC_045512.2' | docker)
25m 4s
Test parameters (24.04.2 | --skip_cutadapt --skip_snpeff | docker)
29m 46s
Test nanopore (24.04.2 | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --artic_minion_medaka_model ./r941_min_high_g360_model.hdf5 --freyja_depthcutoff 1 | docker)
40m 10s
Test nanopore (latest-everything | --gff false --freyja_depthcutoff 1 | docker)
24m 15s
Test parameters (24.04.2 | --skip_kraken2 | docker)
31m 21s
Test nanopore (latest-everything | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz --freyja_depthcutoff 1 | docker)
24m 31s
Test nanopore (latest-everything | --input false --freyja_depthcutoff 1 | docker)
23m 43s
Test nanopore (latest-everything | --min_barcode_reads 10000 | docker)
6m 6s
Test parameters (24.04.2 | --skip_assembly | docker)
26m 16s
Test nanopore (latest-everything | --min_guppyplex_reads 10000 | docker)
9m 7s
Test parameters (24.04.2 | --spades_mode corona | docker)
33m 6s
Test nanopore (latest-everything | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --freyja_depthcutoff 1 | docker)
37m 30s
Test parameters (24.04.2 | --spades_mode metaviral | docker)
31m 36s
Test nanopore (latest-everything | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --artic_minion_medaka_model ./r941_min_high_g360_model.hdf5 --freyja_depthcutoff 1 | docker)
41m 14s
Test parameters (24.04.2 | --skip_plasmidid false --skip_asciigenome | docker)
33m 49s
Test parameters (24.04.2 | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | docker)
33m 14s
Test parameters (24.04.2 | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | docker)
33m 37s
Test parameters (24.04.2 | --skip_noninternal_primers --threeprime_adapters | docker)
29m 41s
Test parameters (latest-everything | --consensus_caller ivar | docker)
33m 3s
Test parameters (latest-everything | --variant_caller bcftools --consensus_caller ivar | docker)
29m 23s
Test parameters (latest-everything | --skip_fastp --skip_pangolin | docker)
32m 18s
Test parameters (latest-everything | --skip_variants | docker)
12m 19s
Test parameters (latest-everything | --skip_cutadapt --skip_snpeff | docker)
29m 13s
Test parameters (latest-everything | --skip_kraken2 | docker)
34m 1s
Test parameters (latest-everything | --skip_assembly | docker)
25m 8s
Test parameters (latest-everything | --spades_mode corona | docker)
32m 52s
Test parameters (latest-everything | --spades_mode metaviral | docker)
31m 40s
Test parameters (latest-everything | --skip_plasmidid false --skip_asciigenome | docker)
36m 54s
Test parameters (latest-everything | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | docker)
33m 14s
Test parameters (latest-everything | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | docker)
31m 25s
Test parameters (latest-everything | --skip_noninternal_primers --threeprime_adapters | docker)
29m 22s
21h 12m 8s