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Patch release v2.3.1 #149

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merged 9 commits into from
Jun 24, 2024
Merged

Patch release v2.3.1 #149

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79a493d
bump version 2.3.1dev
Daniel-VM Jun 21, 2024
75bbec8
Merge pull request #146 from Daniel-VM/dev
Daniel-VM Jun 21, 2024
6008fe5
fix input file not a valid path
Daniel-VM Jun 21, 2024
33b7eab
update changelog #147
Daniel-VM Jun 21, 2024
621a750
Add reviewer suggestion #147
Daniel-VM Jun 21, 2024
b780766
extend reviewer suggestion #147 to remaining input files
Daniel-VM Jun 21, 2024
88f37ad
Merge pull request #147 from Daniel-VM/dev
Daniel-VM Jun 21, 2024
2c711d1
bump version 2.3.1
Daniel-VM Jun 24, 2024
b3eda16
Merge pull request #148 from Daniel-VM/dev
Daniel-VM Jun 24, 2024
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14 changes: 14 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -3,6 +3,20 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## v2.3.1 nf-core/bacass: "Navy Iron Oyster" 2024/06/24

### `Changed`

### `Added`

### `Fixed`

- [#147](https://github.com/nf-core/bacass/pull/147) Fixed input file errors related to samplesheets containing relative paths to symbolic links, addressing the 'not a valid path' error.

### `Dependencies`

### `Deprecated`

## v2.3.0 nf-core/bacass: "Navy Iron Oyster" 2024/06/12

### `Changed`
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4 changes: 2 additions & 2 deletions assets/multiqc_config.yml
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@@ -1,7 +1,7 @@
report_comment: >
This report has been generated by the <a href="https://github.com/nf-core/bacass/releases/tag/2.3.0" target="_blank">nf-core/bacass</a>
This report has been generated by the <a href="https://github.com/nf-core/bacass/releases/tag/2.3.1" target="_blank">nf-core/bacass</a>
analysis pipeline. For information about how to interpret these results, please see the
<a href="https://nf-co.re/bacass/2.3.0/docs/output" target="_blank">documentation</a>.
<a href="https://nf-co.re/bacass/2.3.1/docs/output" target="_blank">documentation</a>.
report_section_order:
"nf-core-bacass-methods-description":
order: -1000
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2 changes: 1 addition & 1 deletion nextflow.config
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Expand Up @@ -278,7 +278,7 @@ manifest {
description = """Simple bacterial assembly and annotation"""
mainScript = 'main.nf'
nextflowVersion = '!>=23.04.0'
version = '2.3.0'
version = '2.3.1'
doi = '10.5281/zenodo.2669428'
}

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6 changes: 3 additions & 3 deletions workflows/bacass.nf
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Expand Up @@ -95,9 +95,9 @@ workflow BACASS {
//
def criteria = multiMapCriteria {
meta, fastq_1, fastq_2, long_fastq, fast5 ->
shortreads: fastq_1 != 'NA' ? tuple(meta, [fastq_1, fastq_2]) : null
longreads: long_fastq != 'NA' ? tuple(meta, long_fastq) : null
fast5: fast5 != 'NA' ? tuple(meta, fast5) : null
shortreads: fastq_1 != 'NA' ? tuple(meta, [file(fastq_1, checkIfExists: true), file(fastq_2, checkIfExists: true)]) : null
longreads: long_fastq != 'NA' ? tuple(meta, file(long_fastq, checkIfExists: true)) : null
fast5: fast5 != 'NA' ? tuple(meta, file(fast5, checkIfExists: true)) : null
}
// See the documentation https://nextflow-io.github.io/nf-validation/samplesheets/fromSamplesheet/
ch_samplesheet
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