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Merge pull request #183 from Daniel-VM/dev
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Fix dfast conda issue by updating version
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Daniel-VM authored Nov 6, 2024
2 parents c476f50 + 0f7646a commit fc52c3e
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -21,6 +21,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### `Fixed`

- [#183](https://github.com/nf-core/bacass/pull/183) Fix DFAST issue in conda environment by updating its version.
- [#182](https://github.com/nf-core/bacass/pull/182) Uncommented required line to pass linting test in `--release` mode.
- [#179](https://github.com/nf-core/bacass/pull/179) Fixed matrix.test_name in linting and missing features from template 3.0.2.
- [#178](https://github.com/nf-core/bacass/pull/178) Fixed bakta running only for one sample.
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2 changes: 1 addition & 1 deletion modules/local/dfast/environment.yml
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Expand Up @@ -4,4 +4,4 @@ channels:
- bioconda
- defaults
dependencies:
- bioconda::dfast=1.2.20
- bioconda::dfast=1.3.2
4 changes: 2 additions & 2 deletions modules/local/dfast/main.nf
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Expand Up @@ -4,8 +4,8 @@ process DFAST {

conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/dfast:1.2.20--h43eeafb_0' :
'biocontainers/dfast:1.2.20--h43eeafb_0' }"
'https://depot.galaxyproject.org/singularity/dfast:1.3.2--h43eeafb_0' :
'biocontainers/dfast:1.3.2--h43eeafb_0' }"

input:
tuple val(meta), path(fasta)
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