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Designate clade 24C (KP.3) #1117

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Jul 11, 2024
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Designate clade 24C (KP.3) #1117

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3db2644
Designate KP.3 as clade 24C
corneliusroemer Jun 15, 2024
c1131f6
fix
corneliusroemer Jun 15, 2024
f663927
f
corneliusroemer Jun 16, 2024
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1 change: 1 addition & 0 deletions defaults/clade_display_names.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -40,3 +40,4 @@
23I: 23I (BA.2.86)
24A: 24A (JN.1)
24B: 24B (JN.1.11.1)
24C: 24C (KP.3)
1 change: 1 addition & 0 deletions defaults/clade_emergence_dates.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -42,3 +42,4 @@ Nextstrain_clade first_sequence
23I 2023-04-01
24A 2023-07-01
24B 2023-11-01
24C 2023-12-01
1 change: 1 addition & 0 deletions defaults/clade_hierarchy.tsv
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Expand Up @@ -40,3 +40,4 @@ clade parent WHO
23I 21L Omicron
24A 23I Omicron
24B 24A Omicron
24C 24B Omicron
3 changes: 3 additions & 0 deletions defaults/clades.tsv
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Expand Up @@ -230,3 +230,6 @@ clade gene site alt
24B nuc 17334 T
24B nuc 22928 C
24B nuc 24872 T

24C clade 24B
24C nuc 23039 G
5 changes: 5 additions & 0 deletions defaults/color_ordering.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -34040,6 +34040,7 @@ clade_membership 23H (HK.3)
clade_membership 23I (BA.2.86)
clade_membership 24A (JN.1)
clade_membership 24B (JN.1.11.1)
clade_membership 24C (KP.3)

################

Expand All @@ -34060,6 +34061,10 @@ emerging_lineage HV.1
emerging_lienage GW.5
emerging_lineage JD.1
emerging_lineage XBB.1.41
emerging_lineage LB.1
emerging_lineage KP.2.3
emerging_lineage JN.1.50
emerging_lineage XDY

################

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32 changes: 32 additions & 0 deletions defaults/emerging_lineages.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -220,6 +220,19 @@ clade gene site alt
23I nuc 15756 A
23I nuc 28958 A

24A clade 23I
24A nuc 11727 A
24A nuc 22926 C
24A nuc 27810 C

24B clade 24A
24B nuc 7113 T
24B nuc 17334 T
24B nuc 22928 C
24B nuc 24872 T

24C clade 24B
24C nuc 23039 G

BA.2.3.20 clade 21L
BA.2.3.20 nuc 6770 G
Expand Down Expand Up @@ -309,3 +322,22 @@ JD.1 nuc 22928 C
XBB.1.41 clade 22F
XBB.1.41 nuc 1473 T
XBB.1.41 nuc 20102 T

LB.1 clade 24A
LB.1 nuc 22111 T
LB.1 nuc 22928 C
LB.1 nuc 22599 C

KP.2.3 clade 24B
KP.2.3 nuc 22599 C
KP.2.3 nuc 25563 T

JN.1.50 clade 24A
JN.1.50 nuc 9298 T
JN.1.50 nuc 22309 C
JN.1.50 nuc 22930 G

XDY clade 24A
XDY nuc 19669 A
XDY nuc 22131 C
XDY nuc 23039 G