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Update pivots to 24A
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Use matching pivots for Nextstrain clades and Pango lineages now that
we have the new 24A clade.
joverlee521 committed Apr 16, 2024

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1 parent 710aa88 commit 66f0ea3
Showing 3 changed files with 5 additions and 5 deletions.
4 changes: 2 additions & 2 deletions config/config.yaml
Original file line number Diff line number Diff line change
@@ -58,14 +58,14 @@ models:
gisaid:
nextstrain_clades:
global:
pivot: "23I"
pivot: "24A"
pango_lineages:
global:
pivot: "JN.1"
open:
nextstrain_clades:
global:
pivot: "23I"
pivot: "24A"
pango_lineages:
global:
pivot: "JN.1"
2 changes: 1 addition & 1 deletion config/mlr-config.yaml
Original file line number Diff line number Diff line change
@@ -13,7 +13,7 @@ settings:

model:
generation_time: 4.8
pivot: "23I"
pivot: "24A"
hierarchical: true

inference:
4 changes: 2 additions & 2 deletions viz/src/App.jsx
Original file line number Diff line number Diff line change
@@ -41,8 +41,8 @@ function App() {
<h2>Clade growth advantage</h2>
<p>
These plots show the estimated growth advantage for given clades relative to clade
23I (lineage BA.2.86). This describes how many more secondary infections a variant causes
on average relative to clade 23I. Vertical bars show the 95% HPD. The "hierarchical" panel
24A (lineage JN.1). This describes how many more secondary infections a variant causes
on average relative to clade 24A. Vertical bars show the 95% HPD. The "hierarchical" panel
shows pooled estimate of growth rates across different locations.
Results last updated {mlrCladesData?.modelData?.get('updated') || 'loading'}.
</p>

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