Update Andersen Lab ingest to new metadata #64
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The SRA data from the Andersen Lab is no longer limited to just BioProject PRJNA1102327 so they've added a new metadata file that includes multiple BioProjects.¹ This commit removes our use of the BioProject accession in our file names as well, except for `PRJNA1102327_old_metadata.csv` which will always be specific to PRJNA1102327. ¹ <andersen-lab/avian-influenza@8211b5b>
I'm assuming `HOSP` stands for "hospital" here.
joverlee521
commented
Jun 25, 2024
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Thanks @joverlee521! I just added an update to annotations. This is working as expected for me. With the fix for |
Good to know that there's an official set of bird codes at https://www.carolinabirdclub.org/bandcodes.html. Thanks to @trvrb's review comment <#64 (comment)>
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Description of proposed changes
Update the Andersen Lab ingest workflow to use the latest metadata file that includes SRA runs from multiple BioProjects.
Related issue(s)
Flagged by @trvrb on Slack that the Andersen Lab repo has started using a new metadata file that now includes multiple BioProjects.
Checklist
s3://nextstrain-data/files/workflows/avian-flu/trial/update-andersen/h5n1/