Allow config overrides #19
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for common variables. Extremely useful for running test builds locally¹ or for running select builds on AWS,. This would be cleaner if we were to do it in a config.yaml or similar, but it's here to preserve familiarity while the repo is seeing a lot of changes. ¹ example command: `snakemake --cores 1 -pf --config 'subtypes=["h5n1"]' 'same_strains_per_segment=True' 'time=2y' 'n_seqs=50'`
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This is incredibly handy. Thank you so much @jameshadfield! |
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Allow config overrides for common variables. Extremely useful for running test builds locally¹ or for running select builds on AWS.
This would be cleaner if we were to do it in a config.yaml or similar, but I didn't chose this approach as I wanted to preserve familiarity while the repo is seeing a lot of changes.
¹ example command:
snakemake --cores 1 -pf --config 'subtypes=["h5n1"]' 'same_strains_per_segment=True' 'time=2y' 'n_seqs=50'