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Update H5N1 cattle outbreak outliers
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@trvrb
trvrb committed Oct 10, 2024
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Expand Up @@ -23,6 +23,14 @@ A/CATTLE/USA/24-022332-005/2024
A/CATTLE/USA/24-015672-001/2024
A/CATTLE/USA/24-022332-007/2024

# These strains show excessive diversity with many homoplasic mutations
# Unclear if sequencing artifact or reassortant, but dropping from the genome-level view
A/cattle/Texas/24-009308-001/2024
A/cattle/Texas/24-009310-009/2024
A/cattle/Texas/24-009495-005/2024
A/cattle/USA/24-009495-005-original/2024
A/DomesticCat/USA/24-009116-001-original/2024

# These strains represent diversity that's significantly outgrouped relative to cattle outbreak
A/americancrow/Iowa/24-006634-001/2024
A/AmericanCrow/USA/24-004479-001-original/2024
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