Merge pull request #17 from nextstrain/victorlin/ci-target

Specify CI target in a Snakemake rule
nextstrain · Apr 27, 2024 · c0c24ac · c0c24ac
2 parents 64b98ca + b8263d2
commit c0c24ac
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diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
@@ -8,4 +8,4 @@ jobs:
   ci:
     uses: nextstrain/.github/.github/workflows/pathogen-repo-ci.yaml@master
     with:
-      build-args: auspice/avian-flu_h5n1_ha_all-time.json
+      build-args: test_target
diff --git a/Snakefile b/Snakefile
@@ -25,6 +25,12 @@ rule all:
     input:
         auspice_json = all_targets()
 
+rule test_target:
+    """
+    For testing purposes such as CI workflows.
+    """
+    input: "auspice/avian-flu_h5n1_ha_all-time.json"
+
 rule files:
     params:
         dropped_strains = "config/dropped_strains_{subtype}.txt",