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Add 3 outliers to cattle-flu build
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The metadata of the dropped strains warrants further investigation,
but dropping for now as they completely throw the tree.

First identified on SPHERES slack, see
<https://bedfordlab.slack.com/archives/CD84ELG0N/p1724894057669049>
for more.
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jameshadfield committed Aug 29, 2024
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Expand Up @@ -17,6 +17,12 @@ A/domesticcat/NewMexico/24-009116-001/2024
# These strains are basal to the outbreak and we exclude them to avoid low-confidence DTA reconstruction.
A/Peregrinefalcon/California/24-005915-001/2024

# These three cattle strains are hundreds of mutations diverged from the outbreak - perhaps due to poor sequencing?
# Perhaps they are another introduction? Dropping for now
A/CATTLE/USA/24-022332-005/2024
A/CATTLE/USA/24-015672-001/2024
A/CATTLE/USA/24-022332-007/2024

# These strains represent diversity that's significantly outgrouped relative to cattle outbreak
A/americancrow/Iowa/24-006634-001/2024
A/AmericanCrow/USA/24-004479-001-original/2024
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