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Update pathogen-repo-ci

Update pathogen-repo-ci #454

Triggered via pull request May 31, 2024 18:58
@genehackgenehack
synchronize #90
update-ci-89
Status Failure
Total duration 5m 44s
Artifacts 2

ci.yaml

on: pull_request
test-pathogen-repo-ci-no-example-data  /  configuration
1s
test-pathogen-repo-ci-no-example-data / configuration
test-pathogen-repo-ci  /  configuration
2s
test-pathogen-repo-ci / configuration
test-docs-ci-conda  /  build-conda
46s
test-docs-ci-conda / build-conda
test-docs-ci-conda  /  build-pip
0s
test-docs-ci-conda / build-pip
test-docs-ci-pip  /  build-conda
0s
test-docs-ci-pip / build-conda
test-docs-ci-pip  /  build-pip
54s
test-docs-ci-pip / build-pip
lint
8s
lint
Matrix: test-pathogen-repo-build
Matrix: test-setup-nextstrain-cli
Matrix: test-pathogen-repo-ci-no-example-data / build
Matrix: test-pathogen-repo-ci / build
Matrix: test-pathogen-repo-ci-no-example-data / ingest
Waiting for pending jobs
Matrix: test-pathogen-repo-ci / ingest
Waiting for pending jobs
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Annotations

3 errors and 1 warning
test-pathogen-repo-build (aws-batch) / run-build
Process completed with exit code 1.
CI
Error when evaluating 'strategy' for job 'ingest'. nextstrain/.github/.github/workflows/pathogen-repo-ci.yaml@1ac155c8ecc6a343b956aafcc21534048645b53f (Line: 241, Col: 18): Error parsing fromJson,nextstrain/.github/.github/workflows/pathogen-repo-ci.yaml@1ac155c8ecc6a343b956aafcc21534048645b53f (Line: 241, Col: 18): Error reading JToken from JsonReader. Path '', line 0, position 0.,nextstrain/.github/.github/workflows/pathogen-repo-ci.yaml@1ac155c8ecc6a343b956aafcc21534048645b53f (Line: 241, Col: 18): Unexpected value ''
CI
Error when evaluating 'strategy' for job 'ingest'. nextstrain/.github/.github/workflows/pathogen-repo-ci.yaml@1ac155c8ecc6a343b956aafcc21534048645b53f (Line: 241, Col: 18): Error parsing fromJson,nextstrain/.github/.github/workflows/pathogen-repo-ci.yaml@1ac155c8ecc6a343b956aafcc21534048645b53f (Line: 241, Col: 18): Error reading JToken from JsonReader. Path '', line 0, position 0.,nextstrain/.github/.github/workflows/pathogen-repo-ci.yaml@1ac155c8ecc6a343b956aafcc21534048645b53f (Line: 241, Col: 18): Unexpected value ''
test-pathogen-repo-build (aws-batch) / run-build
No files were found with the provided path: build.log auspice/ results/ benchmarks/ logs/ .snakemake/log/. No artifacts will be uploaded.

Artifacts

Produced during runtime
Name Size
build-output-conda Expired
153 KB
build-output-docker Expired
152 KB