v2.3

Code for simulation the effect of additional BLA input to either DMS or DLS. Major change is the ability to specify that clustered inputs are to be subdivided using spc spines per compartment, and also specify the min and max distance for the clusters.
Can specify a branch for the clusters or distribute them over the entire neuron.
Add option to use external spike trains for the clustered inputs.
Includes analysis file for measuring plateau amplitude and decay, counting the number of spikes (if NaF not blocked) and then doing analysis of variance on those outputs.

Dorman_and_Blackwell_Biomolecules_2022

Code used for simulating development of synaptic plasticity in a direct pathway SPN with variations of input mappings from cortical input trains to clusters of synaptic inputs.
Includes programs used for simulations on the Neuroscience Gateway

Dorman_and_Blackwell_bioRxiv_2021

Two amplitude and duration threshold rules for synaptic plasticity
add patch and matrix neurons
make NumSyn (in param_syn) and connection velocity (in paramnet) cell type specific (for network creation)
spineChanList (in param_spine) has been changed in dictionary

Gorodetski_et_al_Front_Cell_Neuro_2021

Declarative model specification for MOOSE models. Both the moose_nerp/ep and moose_nerp/ep_net packages were used for simulations of entopeduncular neuron responses to synaptic input from striatum, globus pallidus and subthalamic nucleus.
Major change to code for creating networks of neurons.
Most single neuron package have been moved to the cells directory.
Analysis software resides in anal subdirectory.

FrontNeuroinfSubmit

Declarative model specification for MOOSE models. Both the moose_nerp/gp and moose_nerp/d1d2 packages were used for parameter optimizations reported in the ms. Models were tuned to electrophysiology data in the repo waves.