add reference data for soma report

neuronsimulator · Mar 5, 2024 · c023882 · c023882
1 parent 10ffd46
commit c023882
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diff --git a/reference_data/README.md b/reference_data/README.md
@@ -2,6 +2,8 @@
 
 This repository also contains reference output from running the `ringtest.py`
 script. This can be compared against NEURON and CoreNEURON results in
-integration tests. At present there is just one reference file generated using
-NEURON (`special -python ringtest.py -tstop 100`) with the contemporary
+integration tests.
+
+* spk1.100ms.std.ref : generated using NEURON (`special -python ringtest.py -tstop 100`) with the contemporary
 `master` commit b55c6e1630665a792ced67c6446ed4fb852c7f79.
+* soma.h5 : generated using CORENEURON (`LIBSONATA_ZERO_BASED_GIDS=1 special -mpi -python ringtest.py -tstop 100 -coreneuron -reportmapping`)
diff --git a/reference_data/soma.h5 b/reference_data/soma.h5
diff --git a/ringtest.py b/ringtest.py
@@ -166,7 +166,7 @@ def prun(tstop):
             sim_conf_file = "sim.conf"
             if settings.rank == 0:
                 write_report_config(report_conf_file, "soma.h5", "Mosaic", "compartment", "v",
-                                    "mV", "SONATA", 2, 0.1, 0, tstop, list(range(ncell)))
+                                    "mV", "SONATA", 2, 1, 0, tstop, list(range(ncell)))
                 write_sim_config(sim_conf_file, "corenrn_data", report_conf_file, tstop)
             coreneuron.sim_config=sim_conf_file