Updated examples, documentation and pkgdown site. Also, added 'markdo…

…wn' as a 'Suggested' dependency.

DESCRIPTION

@@ -50,6 +50,7 @@ Suggests:
     covr,
     hasseDiagram,
     knitr,
+    markdown,
     rmarkdown,
     testthat (>= 2.1.0),
     parallel

R/concept_lattice.R

@@ -11,9 +11,6 @@
 #' # Find the concepts
 #' fc_planets$find_concepts()
 #'
-#' # Plot the concept lattice
-#' # fc_planets$concepts$plot()
-#'
 #' # Find join- and meet- irreducible elements
 #' fc_planets$concepts$join_irreducibles()
 #' fc_planets$concepts$meet_irreducibles()

R/fcaR-package.R

@@ -32,9 +32,6 @@ NULL
 #' # Find its concepts and implications
 #' fc_planets$find_implications()
 #'
-#' # Plot the concept lattice
-#' fc_planets$concepts$plot()
-#'
 #' # Print the extracted implications
 #' fc_planets$implications
 #'

R/formal_context.R

@@ -17,9 +17,6 @@
 #' fc_planets <- FormalContext$new(planets)
 #' print(fc_planets)
 #'
-#' # Plot the formal context
-#' fc_planets$plot()
-#'
 #' # Define a set of attributes
 #' S <- SparseSet$new(attributes = fc_planets$attributes)
 #' S$assign(moon = 1, large = 1)

doc/arules.html

@@ -392,23 +392,20 @@ <h2>Importing a transactions object</h2>
 <p>It suffices to initialize a <code>FormalContext</code> object with the transactions dataset:</p>
 <div class="sourceCode" id="cb4"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb4-1"><a href="#cb4-1" aria-hidden="true" tabindex="-1"></a>fc <span class="ot">&lt;-</span> FormalContext<span class="sc">$</span><span class="fu">new</span>(Mushroom)</span>
 <span id="cb4-2"><a href="#cb4-2" aria-hidden="true" tabindex="-1"></a>fc</span>
-<span id="cb4-3"><a href="#cb4-3" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; Registered S3 method overwritten by &#39;pryr&#39;:</span></span>
-<span id="cb4-4"><a href="#cb4-4" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;   method      from</span></span>
-<span id="cb4-5"><a href="#cb4-5" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;   print.bytes Rcpp</span></span>
-<span id="cb4-6"><a href="#cb4-6" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; FormalContext with 8124 objects and 114 attributes.</span></span>
-<span id="cb4-7"><a href="#cb4-7" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;       Class=edible   Class=poisonous   CapShape=bell   CapShape=conical  </span></span>
-<span id="cb4-8"><a href="#cb4-8" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;    1                        X                                            </span></span>
-<span id="cb4-9"><a href="#cb4-9" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;    2       X                                                             </span></span>
-<span id="cb4-10"><a href="#cb4-10" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;    3       X                                 X                           </span></span>
-<span id="cb4-11"><a href="#cb4-11" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;    4                        X                                            </span></span>
-<span id="cb4-12"><a href="#cb4-12" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;    5       X                                                             </span></span>
-<span id="cb4-13"><a href="#cb4-13" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;    6       X                                                             </span></span>
-<span id="cb4-14"><a href="#cb4-14" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;    7       X                                 X                           </span></span>
-<span id="cb4-15"><a href="#cb4-15" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;    8       X                                 X                           </span></span>
-<span id="cb4-16"><a href="#cb4-16" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;    9                        X                                            </span></span>
-<span id="cb4-17"><a href="#cb4-17" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;   10       X                                 X                           </span></span>
-<span id="cb4-18"><a href="#cb4-18" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; Other attributes are: CapShape=flat, CapShape=knobbed, CapShape=sunken,</span></span>
-<span id="cb4-19"><a href="#cb4-19" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; CapShape=convex, CapSurf=fibrous, CapSurf=grooves, ...</span></span></code></pre></div>
+<span id="cb4-3"><a href="#cb4-3" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; FormalContext with 8124 objects and 114 attributes.</span></span>
+<span id="cb4-4"><a href="#cb4-4" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;       Class=edible   Class=poisonous   CapShape=bell   CapShape=conical  </span></span>
+<span id="cb4-5"><a href="#cb4-5" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;    1                        X                                            </span></span>
+<span id="cb4-6"><a href="#cb4-6" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;    2       X                                                             </span></span>
+<span id="cb4-7"><a href="#cb4-7" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;    3       X                                 X                           </span></span>
+<span id="cb4-8"><a href="#cb4-8" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;    4                        X                                            </span></span>
+<span id="cb4-9"><a href="#cb4-9" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;    5       X                                                             </span></span>
+<span id="cb4-10"><a href="#cb4-10" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;    6       X                                                             </span></span>
+<span id="cb4-11"><a href="#cb4-11" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;    7       X                                 X                           </span></span>
+<span id="cb4-12"><a href="#cb4-12" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;    8       X                                 X                           </span></span>
+<span id="cb4-13"><a href="#cb4-13" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;    9                        X                                            </span></span>
+<span id="cb4-14"><a href="#cb4-14" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt;   10       X                                 X                           </span></span>
+<span id="cb4-15"><a href="#cb4-15" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; Other attributes are: CapShape=flat, CapShape=knobbed, CapShape=sunken,</span></span>
+<span id="cb4-16"><a href="#cb4-16" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; CapShape=convex, CapSurf=fibrous, CapSurf=grooves, ...</span></span></code></pre></div>
 <p>From this point, we can use all the functionalities in the <code>fcaR</code> package regarding formal contexts, concept lattices and implication sets.</p>
 </div>
 <div id="exporting-a-formalcontext" class="section level2">

doc/implications.html

@@ -940,9 +940,9 @@ <h2>Simplification Logic</h2>
 <div class="sourceCode" id="cb14"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb14-1"><a href="#cb14-1" aria-hidden="true" tabindex="-1"></a>fc_I<span class="sc">$</span>implications<span class="sc">$</span><span class="fu">apply_rules</span>(<span class="at">rules =</span> <span class="fu">c</span>(<span class="st">&quot;composition&quot;</span>,</span>
 <span id="cb14-2"><a href="#cb14-2" aria-hidden="true" tabindex="-1"></a>                                        <span class="st">&quot;simplification&quot;</span>))</span>
 <span id="cb14-3"><a href="#cb14-3" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; Processing batch</span></span>
-<span id="cb14-4"><a href="#cb14-4" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; --&gt; Composition: from 12 to 12 in 0.003 secs.</span></span>
-<span id="cb14-5"><a href="#cb14-5" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; --&gt; Simplification: from 12 to 12 in 0.156 secs.</span></span>
-<span id="cb14-6"><a href="#cb14-6" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; Batch took 0.164 secs.</span></span></code></pre></div>
+<span id="cb14-4"><a href="#cb14-4" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; --&gt; Composition: from 12 to 12 in 0.002 secs.</span></span>
+<span id="cb14-5"><a href="#cb14-5" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; --&gt; Simplification: from 12 to 12 in 0.131 secs.</span></span>
+<span id="cb14-6"><a href="#cb14-6" aria-hidden="true" tabindex="-1"></a><span class="co">#&gt; Batch took 0.137 secs.</span></span></code></pre></div>
 <p>This enables the reduction of the cardinality and/or the size of the <code>ImplicationSet</code>.</p>
 <p>In addition, the “simplification” rule to remove redundancies can be used in the computation of the closure of a set, to provide a reduced set of implications that is inferred from the set of attributes:</p>
 <div class="sourceCode" id="cb15"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb15-1"><a href="#cb15-1" aria-hidden="true" tabindex="-1"></a><span class="co"># Let us build a set of attributes</span></span>

docs/pkgdown.yml

@@ -6,5 +6,5 @@ articles:
   concept_lattice: concept_lattice.html
   extending_equivalence: extending_equivalence.html
   implications: implications.html
-last_built: 2020-11-27T10:51Z
+last_built: 2020-12-01T20:00Z