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Adding KNNClassificationDecider#463

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david-z-shi wants to merge 143 commits intoneurodata:KNNDeciderneurodata/ProgLearn:KNNDeciderfrom david-z-shi:KNNDeciderdavid-z-shi/progressive-learning:KNNDeciderCopy head branch name to clipboard

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Commits on Sep 18, 2020

• Merge pull request #2 from neurodata/master

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Commits on Sep 22, 2020

• Merge remote-tracking branch 'upstream/master'

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• Revert "Merge remote-tracking branch 'upstream/master'"

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• Revert "Revert "Merge remote-tracking branch 'upstream/master'""

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Commits on Sep 27, 2020

• Merge pull request #3 from neurodata/main

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Commits on Oct 27, 2020

• Merge pull request #4 from neurodata/main

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Commits on Nov 13, 2020

• staging branch finally

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Commits on Nov 18, 2020

• all tests pass

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Commits on Nov 20, 2020

• finished documentation

  

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• fixed some bugs and finished predict tests

  

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• Fixed header, unnecessary imports

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• Including oblique_tree in proglearn

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• fixing importing issues

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Commits on Nov 21, 2020

• black formatting

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• Fix docstring indents

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Commits on Dec 11, 2020

• black formatting

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• Merge branch 'staging' of https://github.com/parthgvora/ProgLearn into staging

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• oblique trees added

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• consistency of default params

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Commits on Dec 12, 2020

• made some documentation changes and created decision boundaries notebook

  

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• Update tutorials.rst

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• Merge branch 'staging' into staging

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Commits on Dec 14, 2020

• ConvRF Experiments

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• Remove duplicate and unused function

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Commits on Dec 15, 2020

• renamed notebooks

  

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• Update and rename oblique_decision_boundaries_functions.py to sporf_decision_boundaries_functions.py

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• Rename function for consistency

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• Merge pull request neurodata#374 from parthgvora/staging

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Commits on Dec 16, 2020

• fte/bte mnist added

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• Make the array-ness of self.classes explicit

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• Merge pull request neurodata#12 from neurodata/staging

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• add truth line - attempt to run in parallel, broke when parallel = False

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• input n, mean, var to plot_posterior function, define truth function

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• set parallel=True to run on AWS

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• parallel on, feed n, mean, var to plot_fig1

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• make mean and cov same length: n/2 for truth

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• feed ax to plot_truth

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• fixed ConvRF

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• Reformat with black

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Commits on Dec 17, 2020

• fig 1 tutorial ground truth updates

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• make x, y dimensions for ground truth match at least

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• visualize fig 1 even if incorrect

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• no recalculation of X from y

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• plotted

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• use scipy.stats.norm.pdf, plug in X_eval and the two different means (positive, negative)

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• plotted with norm.pdf for ground truth

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• add legend

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• run with legend

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Commits on Dec 18, 2020

• Merge pull request neurodata#397 from emilyachang/ftebte-mnist

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• cleaned up output of intermediate and final 3 cells

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• Reformat certain cells and clean up imports

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• Clean up imports

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• no legend, cleaned up comments, prepared to run uncertaintyforest_posteriorestimates with ground truth in both tutorials and benchmarks

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• tutorial run

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• Merge pull request neurodata#395 from ypeng22/staging

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Commits on Dec 22, 2020

• ConvRF 3-Class Classification Experiment

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• ConvRF 3-Class Classification Experiment

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• Update ConvRF_Kappas_3_Class.ipynb

  

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Commits on Dec 23, 2020

• Type Error with existing UF notebooks - tracking down bug, perhaps in proglearn package version

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• main branch proglearn package version not up to date with tree_construction_proportion, etc

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• error with lf_ due to staging version of proglearn package

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• Fix kwargs

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• Correct forest name

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Commits on Dec 24, 2020

• Merge pull request neurodata#405 from PSSF23/amazing_trees

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• fig 2 and 3 notebooks run with fix from Hao in stagingg, but still getting Key Error 200 for fig 1 with Truth line

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• Update documentation

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• Optimize subtitle formats

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• Merge pull request neurodata#404 from mkusman1/staging

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Commits on Jan 4, 2021

• Merge from neurodata/staging - Hao updates especially

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Commits on Jan 6, 2021

• Optimize lf initialization

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• Optimize documentation and rerun for checks

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• Fix format

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• Remove numpy version

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Commits on Jan 8, 2021

• Merge pull request neurodata#409 from PSSF23/shots_fired - addresses issue with LF initialization leading to Key Error

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• merged from staging

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• finish accepting changes from merge from staging

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• update uf tutorials and benchmarks - tutorials plotted with parallel=False, benchmarks ready to plot in parallel on AWS

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• Merge pull request neurodata#410 from PSSF23/skin

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• Simplified np.asarray calls

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Commits on Jan 9, 2021

• Apply np.asarray format to KNNClassificationVoter

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• Merge pull request neurodata#407 from neurodata/hhelm10-patch-1

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• attempted posteriorestimates benchmarks, but threw ABCMeta error, tutorial ran with parallel = False, will set tutorial to parallel = True and try that again before rerunning benchmarks

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• parallel = True on all 3 uf tutorials to test parallel condition on AWS

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• tutorials run with parallel=True on AWS

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Commits on Jan 10, 2021

• benchmarks posteriorestimates run with ground truth, parallel = True

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• benchmarks conditionalentropy full rerun, parallel = True

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Commits on Jan 11, 2021

• benchmarks mutualinformationestimates with parallel = True

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• changed tutorials uf notebooks back to parallel = False, reran locally

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• conditionalentropyestimates - suppress warnings

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• Merge pull request neurodata#411 from EYezerets/fig1uftruth

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Commits on Jan 13, 2021

• Fix typo in docstring

  

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• Fix incorrect array dimensions in docstring

  

  Vivek Gopalakrishnan

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• Add wrapper for calculating Gini impurity

  

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• Parallelize Gini impurity calculation

  

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• Add workers argument to tests

  

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• Fix docstring for workers argument

  

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• Merge pull request neurodata#412 from v715/patch-1

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• Merge pull request neurodata#414 from v715/patch-2

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• Use specified worker numbers for parallelization

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• Merge pull request neurodata#416 from v715/parallelize-ObliqueSplitter

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Commits on Feb 2, 2021

• Remove SPORF

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• Merge pull request neurodata#429 from PSSF23/ash_like_snow

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Commits on Feb 3, 2021

• move to circle.ci

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• add circle.ci badge

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• remove python version requirement

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• fix black folder

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• fix black folder

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• fix proglearn folder

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• Update CircleCI badge url

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• Update CircleCI badge

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• Update install.rst

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• do nothing

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• Update setup.py

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• Merge pull request neurodata#430 from neurodata/CI_fix

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Commits on Feb 4, 2021

• circle ci badge fix

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• Update README.md

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• Increment version number

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• Merge pull request neurodata#433 from neurodata/CI_fix

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• Merge pull request neurodata#431 from neurodata/staging

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Commits on Feb 8, 2021

• Update forest.rst

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• Update config.yml

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• Merge pull request #1 from neurodata/staging

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Commits on Feb 9, 2021

• Added overview section to the Proglearn documentation

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• Merge branch 'staging' of https://github.com/bstraus1/ProgLearn into staging

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• Update DOI badge to cite all versions

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• Update DOI badge to cite all versions

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• Change terms for adding the overview section

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• Optimize style and remove unnecessary section

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• Merge pull request neurodata#441 from bstraus1/staging

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Commits on Feb 10, 2021

• Merge pull request neurodata#440 from PSSF23/smooth_criminal

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Commits on Feb 12, 2021

• Merge branch 'master' into KNNDecider

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• Merge branch 'xor_rxor_KNN' into KNNDecider

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Commits on Feb 18, 2021

• first experiments with KNN

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Commits on Mar 4, 2021

• update with not working experiment

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Commits on Mar 11, 2021

• testing experiments

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Commits on Mar 18, 2021

• updated with simpler KNN implementation

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Commits on Mar 24, 2021

• update experiments with KNNClassification settings and KNNRegression visualizations

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Commits on Apr 1, 2021

• update with some trial experiments

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Commits on May 3, 2021

• update with experiments

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• update with some changes

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• black formatting fixes

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• black formatting changes

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Commits on May 4, 2021

• deleted some files

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