CURVAS dataset #341
Workflow file for this run
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| name: Tests | |
| on: [ pull_request ] | |
| env: | |
| MODULE_NAME: amid | |
| jobs: | |
| test: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| python-version: [ '3.8', '3.9', '3.10', '3.11' ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Check the version | |
| if: "! github.event.pull_request.head.repo.fork " | |
| run: | | |
| VERSION=$(python -c "from pathlib import Path; import runpy; folder, = {d.parent for d in Path().resolve().glob('*/__init__.py') if d.parent.is_dir() and (d.parent / '__version__.py').exists()}; print(runpy.run_path(folder / '__version__.py')['__version__'])") | |
| MATCH=$(pip index versions $MODULE_NAME | grep "Available versions:" | grep $VERSION) || echo | |
| echo $MATCH | |
| if [ "$GITHUB_BASE_REF" = "master" ] && [ "$MATCH" != "" ]; then exit 1; fi | |
| - name: Build the package | |
| run: | | |
| python setup.py sdist | |
| - name: Install | |
| run: | | |
| pip install dist/* | |
| pip install -r tests/requirements.txt | |
| cd tests | |
| export MODULE_PARENT=$(python -c "import $MODULE_NAME, os; print(os.path.dirname($MODULE_NAME.__path__[0]))") | |
| export MODULE_PARENT=${MODULE_PARENT%"/"} | |
| cd .. | |
| echo $MODULE_PARENT | |
| echo "MODULE_PARENT=$(echo $MODULE_PARENT)" >> $GITHUB_ENV | |
| - name: Create the storage | |
| if: "! github.event.pull_request.head.repo.fork " | |
| env: | |
| CACHE_HOST: ${{ secrets.CACHE_HOST }} | |
| CACHE_HOST_KEY: ${{ secrets.CACHE_HOST_KEY }} | |
| CACHE_HOST_USER: ${{ secrets.CACHE_HOST_USER }} | |
| run: | | |
| mkdir -p ~/.config/amid ~/.ssh | |
| cat >~/.config/amid/.bev.yml <<EOL | |
| local: | |
| storage: '/home/runner/work/amid/amid/storage' | |
| cache: '/home/runner/work/amid/amid/cache' | |
| remote: | |
| storage: | |
| remote: | |
| sftp: 'amid:bucket' | |
| meta: | |
| fallback: local | |
| EOL | |
| amid init | |
| cat >~/.ssh/config <<EOL | |
| Host amid | |
| HostName $CACHE_HOST | |
| User $CACHE_HOST_USER | |
| IdentityFile ~/.ssh/amid | |
| EOL | |
| echo "$CACHE_HOST_KEY" > ~/.ssh/amid | |
| chmod 700 ~/.ssh | |
| chmod 600 ~/.ssh/amid | |
| - name: Check readme generation | |
| if: "! github.event.pull_request.head.repo.fork " | |
| run: | | |
| pip install -r docs/requirements.txt | |
| BEFORE=$(sha256sum README.md) | |
| python docs/fill_readme.py | |
| AFTER=$(sha256sum README.md) | |
| if [ "$BEFORE" != "$AFTER" ]; then echo "The README changed after table generation. Please run 'python docs/fill_readme.py'" && exit 1; fi | |
| - name: Test with pytest | |
| if: "! github.event.pull_request.head.repo.fork " | |
| run: | | |
| pytest tests -m "not raw" --junitxml=reports/junit-${{ matrix.python-version }}.xml --cov="$MODULE_PARENT/$MODULE_NAME" --cov-report=xml --cov-branch | |
| - name: Generate coverage report | |
| if: "! github.event.pull_request.head.repo.fork " | |
| run: | | |
| coverage xml -o reports/coverage-${{ matrix.python-version }}.xml | |
| sed -i -e "s|$MODULE_PARENT/||g" reports/coverage-${{ matrix.python-version }}.xml | |
| sed -i -e "s|$(echo $MODULE_PARENT/ | tr "/" .)||g" reports/coverage-${{ matrix.python-version }}.xml | |
| - name: Upload artifacts | |
| if: "! github.event.pull_request.head.repo.fork " | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: reports-${{ matrix.python-version }} | |
| path: reports/*-${{ matrix.python-version }}.xml | |
| # TODO: coverage is not informative in the CI anyway | |
| # - name: Upload coverage results | |
| # if: "! github.event.pull_request.head.repo.fork " | |
| # uses: codecov/codecov-action@v3 | |
| # with: | |
| # fail_ci_if_error: true | |
| # files: reports/coverage-${{ matrix.python-version }}.xml | |
| # verbose: true |