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Feature netmhc refactor and bug fixes#44

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nikhil wants to merge 19 commits intodevmskcc/neoantigen-pipeline:devfrom feature/netmhc_refactormskcc/neoantigen-pipeline:feature/netmhc_refactorCopy head branch name to clipboard

+4,892-596

Commits

Commits on Jun 7, 2024

• Added new modules for netmhcpan processing refactor

  nikhil

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  efcc9a8

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• Updated nf-core subworkflow

  nikhil

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  387f5be

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• Updated workflow to work with netmhcpan refactor

  nikhil

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  b5164d0

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Commits on Jun 8, 2024

• Updated file for testing

  nikhil

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  a956a57

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Commits on Jun 13, 2024

• Added production config

  nikhil

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  9aa53e9

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• Updated nextflow modules

  nikhil

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  38adbf2

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• Update facets line to use the hisens instead of genelevel.

  nikhil

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  ff95285

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• Merge branch 'feature/netmhc_refactor' of github.com:mskcc/NeoAntigen-Pipeline into feature/netmhc_refactor

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  2a2bd56

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• Linting fixes

  nikhil

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  26f56bc

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• Formatting fix

  nikhil

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  ec7a321

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• Automatic fix for files_unchanged linting errors

  nikhil

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  694b3e0

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• Removed unused processes in the modules config

  nikhil

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  8647576

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• Removed unused module

  nikhil

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  1f072e1

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• Unset editorconfig for msk modules and subworkflows

  nikhil

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  aa4f12f

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• Removed zenodo cite

  nikhil

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  5a348d9

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• Removed empty zenodo link

  nikhil

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  8b7d0bb

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• Set nf-core version

  nikhil

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  38fcf19

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Commits on Jun 14, 2024

• Update download_pipeline.yml

  nikhil

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  34dd1bb

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• revert nf-core tools downgrade

  nikhil

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  cd9ec78

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