Merge pull request #8 from mskcc-omics-workflows/feature/add_neoantig…

…en_utils_base_image Add neoantigen-utils-base image
mskcc-omics-workflows · Oct 16, 2024 · 6f4af05 · 6f4af05
2 parents bdde390 + 51ab354
commit 6f4af05
Showing 1 changed file with 47 additions and 0 deletions.
diff --git a/containers/neoantigen-utils-base/1.0.0/Dockerfile b/containers/neoantigen-utils-base/1.0.0/Dockerfile
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+FROM ubuntu:20.04
+
+# Labels
+LABEL org.opencontainers.image.vendor="MSKCC-OMICS-WORKFLOWS" \
+      org.opencontainers.image.authors="John Orgera ([email protected]), Nikhil Kumar ([email protected])" \
+      org.opencontainers.image.created="2024-04-24T11:07:00Z" \
+      org.opencontainers.image.version="1.0.0" \
+      org.opencontainers.image.version.python="3.8" \
+      org.opencontainers.image.source="https://github.com/mskcc-omics-workflows/containers/containers/neoantigen-utils-base/" \
+      org.opencontainers.image.url="https://github.com/mskcc-omics-workflows/containers/" \
+      org.opencontainers.image.title="Neoantigen Utils Base" \
+      org.opencontainers.image.description="The base image for neoantigen helper utils"
+
+ENV DEBIAN_FRONTEND=noninteractive
+
+RUN set -xe && apt-get update \
+    # Install packages
+    && apt-get install --no-install-recommends -y \
+    libncurses5-dev \
+    libbz2-dev \
+    liblzma-dev \
+    libcurl4-gnutls-dev \
+    zlib1g-dev \
+    libssl-dev \
+    gcc \
+    wget \
+    make \
+    perl \
+    bzip2 \
+    pkg-config \
+    libpng-dev \
+    libjpeg8-dev \
+    libfreetype6-dev \
+    unzip \
+    git \
+    python3.8 \
+    python3-pip \
+    g++ \
+    # Install vcflib
+    && git clone https://github.com/Sentieon/vcflib.git /usr/bin/vcflib/ \
+    # Upgrade pip
+    && python3 -m pip install --no-cache-dir --upgrade pip \
+    && pip3 install --no-cache-dir numpy \
+    && pip3 install --no-cache-dir pandas \
+    # Clean up
+    && apt-get clean \
+    && rm -rf /var/lib/apt/lists/*