Skip to content

Commit

Permalink
Update heatmap ref
Browse files Browse the repository at this point in the history
  • Loading branch information
ficolo committed May 17, 2024
1 parent 5001295 commit 799d733
Show file tree
Hide file tree
Showing 2 changed files with 2 additions and 2 deletions.
Original file line number Diff line number Diff line change
Expand Up @@ -212,7 +212,7 @@ public class GeneEntry {
}

private Map<String, String> populateUmassData(){
List<String> originalUmassGeneSymbols = Arrays.asList("4933427D14Rik", "Aasdhppt", "Aatf", "Actr8", "Alg14", "Ap2s1", "Atp2b1", "Atp5d", "Atp6v1f", "B4gat1", "Bc052040", "Bcs1l", "Borcs6", "Casc3", "Ccdc59", "Cct7", "Cct8", "Cdc37", "Cenpo", "Cherp", "Clptm1", "Clpx", "Cog1", "Dbr1", "Dctn6", "Ddx21", "Ddx46", "Ddx47", "Ddx59", "Dhx37", "Dhx8", "Dnaaf2", "Dnajc13", "Dolk", "Early Gene Expression", "Ebna1bp2", "Efl1", "Eif2s1", "Eif5b", "Eipr1", "Elof1", "Eny2", "Exoc2", "Exosc2", "Fastkd5", "Gemin6", "Glrx3", "Gspt1", "Gtpbp4", "Haus4", "Hlcs", "Ipo11", "Ipo7", "Isca1", "Lin52", "Ltv1", "Mars2", "Mbip", "Mcrs1", "Med20", "Mepce", "Mrm3", "Mrpl22", "Mrpl3", "Mrpl41", "Mrpl44", "Mrps18c", "Mrps22", "Mrps25", "Mtpap", "Nars", "Nars2", "Ncapd3", "Ndc80", "Ndufa9", "Ndufs8", "Nifk", "Nsl1", "Nup155", "Nup205", "Nup93", "Orc2", "Orc6", "Osbp", "Pdcd7", "Phenotypes of Novel IMPC Alleles", "Pmpcb", "Pold2", "Polr1a", "Polr1d", "Polr2b", "Pop5", "Ppp1r35", "Prim1", "Prpf4b", "Rab11a", "Rad54l2", "Ranbp2", "Rbbp4", "Riok1", "Rpain", "Sars", "Sart3", "Scfd1", "Sdhaf2", "Sepsecs", "Ska2", "Smarce1", "Snapc2", "Snrnp70", "Sptb", "Sptssa", "Strn3", "Taf1c", "Taf1d", "Tbcb", "Tbcc", "Tbcd", "Thoc3", "Thoc7", "Timm22", "Tmx2", "Tomm20", "Tpk1", "Trit1", "Trmt5", "Tsen54", "Ttc1", "Ttk", "Tubgcp2", "Tubgcp4", "U2af2", "Ube2m", "Uqcr10", "Washc4", "Wdr73", "Ykt6", "Ylpm1", "Zc3h4", "Zfp407", "Zfp622", "Zwint");
List<String> originalUmassGeneSymbols = Arrays.asList("4933427D14Rik", "Aasdhppt", "Aatf", "Actr8", "Alg14", "Ap2s1", "Atp2b1", "Atp5d", "Atp6v1f", "B4gat1", "Bc052040", "Bcs1l", "Borcs6", "Casc3", "Ccdc59", "Cct7", "Cct8", "Cdc37", "Cenpo", "Cherp", "Clptm1", "Clpx", "Cog1", "Dbr1", "Dctn6", "Ddx21", "Ddx46", "Ddx47", "Ddx59", "Dhx37", "Dhx8", "Dnaaf2", "Dnajc13", "Dolk", "Ebna1bp2", "Efl1", "Eif2s1", "Eif5b", "Eipr1", "Elof1", "Eny2", "Exoc2", "Exosc2", "Fastkd5", "Gemin6", "Glrx3", "Gspt1", "Gtpbp4", "Haus4", "Hlcs", "Ipo11", "Ipo7", "Isca1", "Lin52", "Ltv1", "Mars2", "Mbip", "Mcrs1", "Med20", "Mepce", "Mrm3", "Mrpl22", "Mrpl3", "Mrpl41", "Mrpl44", "Mrps18c", "Mrps22", "Mrps25", "Mtpap", "Nars", "Nars2", "Ncapd3", "Ndc80", "Ndufa9", "Ndufs8", "Nifk", "Nsl1", "Nup155", "Nup205", "Nup93", "Orc2", "Orc6", "Osbp", "Pdcd7", "Pmpcb", "Pold2", "Polr1a", "Polr1d", "Polr2b", "Pop5", "Ppp1r35", "Prim1", "Prpf4b", "Rab11a", "Rad54l2", "Ranbp2", "Rbbp4", "Riok1", "Rpain", "Sars", "Sart3", "Scfd1", "Sdhaf2", "Sepsecs", "Ska2", "Smarce1", "Snapc2", "Snrnp70", "Sptb", "Sptssa", "Strn3", "Taf1c", "Taf1d", "Tbcb", "Tbcc", "Tbcd", "Thoc3", "Thoc7", "Timm22", "Tmx2", "Tomm20", "Tpk1", "Trit1", "Trmt5", "Tsen54", "Ttc1", "Ttk", "Tubgcp2", "Tubgcp4", "U2af2", "Ube2m", "Uqcr10", "Washc4", "Wdr73", "Ykt6", "Ylpm1", "Zc3h4", "Zfp407", "Zfp622", "Zwint");
System.out.println("calling decorate Gene info");
Map<String, String> symbolAndAccession = this.getLatestGeneSymbolAndAccession(originalUmassGeneSymbols);
System.out.println("symbolAndAccession size="+symbolAndAccession.size());
Expand Down
2 changes: 1 addition & 1 deletion web/src/main/webapp/WEB-INF/views/embryo.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@
<script type='text/javascript' src='${baseUrl}/js/slider.js?v=${version}'></script>
<link rel="stylesheet" href='${baseUrl}/css/slider.css?v=${version}'/>
<link href="${baseUrl}/css/alleleref.css" rel="stylesheet"/>
<script defer="defer" src="https://impc-datasets.s3.eu-west-2.amazonaws.com/embryo-landing-assets/main.80b342d8.js"></script>
<script defer="defer" src="https://impc-datasets.s3.eu-west-2.amazonaws.com/embryo-landing-assets/main.cb8ab8bd.js"></script>
<link href="https://ficolo.github.io/impc-labs/static/css/main.073c9b0a.css" rel="stylesheet"/>
<script>
function csvToJSON(csv) {
Expand Down

0 comments on commit 799d733

Please sign in to comment.