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Releases: mooreryan/pasv

2.0.2

08 Dec 00:42
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PASV version 2.0.2

Changes

  • Fixed 50 job limit (#21)

Installing

  • To install external dependencies, see here.
  • For info on installing pre-compiled binaries, see here.
  • For info on installing from source, see here.
  • For info on using Docker rather than installing, see here.

If you are on Linux, you will may have the best luck with the "pasv-alpine-static" version. It avoids dynamically linking libc, which let's you run pasv on some older systems.

After unzipping the binaries, you will need to make them executable (e.g., chmod 755 ...). For example:

$ wget https://github.com/mooreryan/pasv/releases/download/2.0.2/pasv-2.0.2-alpine-static.zip
$ unzip pasv-2.0.2-alpine-static.zip
$ chmod 755 pasv
$ ./pasv --help

2.0.1

19 Nov 07:09
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PASV version 2.0.1

Changes

  • Fixed issue with precompiled binaries from GH actions generating instrumentation files (#20)

Installing

  • To install external dependencies, see here.
  • For info on installing pre-compiled binaries, see here.
  • For info on installing from source, see here.
  • For info on using Docker rather than installing, see here.

If you are on Linux, you will may have the best luck with the "pasv-alpine-static" version. It avoids dynamically linking libc, which let's you run pasv on some older systems.

2.0.0

10 Sep 04:14
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PASV version 2

Changes

  • New commands allow use of HMMER, MAFFT, or Clustal Omega to generate alignments, as well as checking sequences aligned externally
  • Improved command line interface
  • Easier installation with pre-compiled binaries and Docker
  • Improved documentation

Installing

  • To install external dependencies, see here.
  • For info on installing pre-compiled binaries, see here.
  • For info on installing from source, see here.
  • For info on using Docker rather than installing, see here.

If you are on Linux, you will may have the best luck with the "pasv-alpine-static" version. It avoids dynamically linking libc, which let's you run pasv on some older systems.

v1.3.0

28 May 03:32
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  • Add reference alignment info for all queries
  • Abort if input files look like alignments (eg have gaps)
  • Better error messages when missing certain files

v1.2.2

25 May 21:22
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Fix the version mismatch.

v1.2.1

22 Oct 23:10
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  • Slim down the docker image
  • Update the pasv_docker script

v1.2.0

17 Oct 18:11
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Add alignment scores to pasv_types output.

v1.1.11

19 Apr 20:11
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Bug fix

v1.1.10

19 Apr 20:03
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If the first reference doesn't span the ROI, you can get weird errors. This should clean up the error messages a bit.

v1.1.9

21 Feb 20:18
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  • Fixed the error handling
  • Changed some debug messages

Make sure to update pasv_lib with gem update pasv_lib or something similar. It should be v0.3.0.