New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add replaced gene ID mapping file in monarch mapping commons #918

Open

kevinschaper opened this issue Nov 26, 2024 · 0 comments

Assignees

Milestone

2025-02 Release

Member

kevinschaper commented Nov 26, 2024 •

edited

Loading

We need create SSSOM to capture gene ID replacement (from an old to new ID)

Files:
NCBI: https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_history.gz
HGNC: http://storage.googleapis.com/public-download-files/hgnc/tsv/tsv/withdrawn.txt
Alliance (ZFIN, MGI, FB, RGD, WormBase, XB) BGI (urls in monarch-ingest download.yaml) files, secondaryIds field.
PomBase:
dictyBase:

kevinschaper added this to the 2024-12 Release milestone

sagehrke assigned kevinschaper

sagehrke modified the milestones: 2024-12 Release, 2025-02 Release

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment