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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 238 54

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 48 4

  3. MAxO MAxO Public

    Medical action ontology

    HTML 52 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 15 2

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Python 19 6

Repositories

Showing 10 of 240 repositories
  • pyphetools Public

    Python Phenopacket Tools

    monarch-initiative/pyphetools’s past year of commit activity
    Python 11 MIT 1 3 0 Updated Jan 10, 2025
  • monarch-initiative/maxo-annotation-ingest’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jan 10, 2025
  • mondo-ingest Public

    Coordinating the mondo-ingest with external sources

    monarch-initiative/mondo-ingest’s past year of commit activity
    Jupyter Notebook 6 3 229 (1 issue needs help) 19 Updated Jan 9, 2025
  • monarch-app Public

    Monarch Initiative website and API

    monarch-initiative/monarch-app’s past year of commit activity
    Python 19 BSD-3-Clause 6 194 (3 issues need help) 10 Updated Jan 9, 2025
  • babelon Public

    A format for language profiles for ontologies

    monarch-initiative/babelon’s past year of commit activity
    Jupyter Notebook 8 MIT 0 15 0 Updated Jan 9, 2025
  • pheval.llm Public

    Analysis of LLMs for Clinical Observations

    monarch-initiative/pheval.llm’s past year of commit activity
    Python 5 BSD-3-Clause 0 10 1 Updated Jan 9, 2025
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 238 CC-BY-4.0 54 422 (2 issues need help) 35 Updated Jan 9, 2025
  • mic-ingest Public

    Ingest for Micronutrient Information Center using OntoGPT

    monarch-initiative/mic-ingest’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Jan 8, 2025
  • phenotype2phenopacket Public

    Phenotype2Phenopacket is a command-line tool that converts a phenotype annotation into GA4GH Phenopackets, facilitating standardised phenotypic data representation.

    monarch-initiative/phenotype2phenopacket’s past year of commit activity
    Python 2 1 0 0 Updated Jan 8, 2025
  • phenopacket2prompt Public

    GA4GH Phenopacket to LLM prompt

    monarch-initiative/phenopacket2prompt’s past year of commit activity
    Java 3 MIT 2 3 0 Updated Jan 8, 2025

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