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docs update
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mikolmogorov committed Jan 14, 2019
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Expand Up @@ -173,12 +173,12 @@ it makes sense to set this parameter manualy.

### Metagenome mode

Metagenome assembly mode, deigned for highl coverage variation accross
the assembled species. This mode is tuned to be sensitive to underrepresented
sequence at low coverage (as low as 2x). In some examples of simple metagenomes,
we observed that the normal (isolate) Flye mode assembled more contigious bacterial
consensus sequence, while the metagenome mode was not as contigious, but
revealed the strain mixtures. For relatively complex metagenome `--meta` mode
Metagenome assembly mode, that is designed for highly non-uniform coverage and
is sensitive to underrepresented sequence at low coverage (as low as 2x).
In some examples of simple metagenomes, we observed that the normal (isolate)
Flye mode assembled more contigious bacterial
consensus sequence, while the metagenome mode was slightly more fragmented, but
revealed strain mixtures. For relatively complex metagenome `--meta` mode
is the recommended way.

### Contig assembly coverage
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