Code

Initialise mediation functions#503

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TuomasBorman merged 41 commits intodevelmicrobiome/mia:develfrom mediationmicrobiome/mia:mediationCopy head branch name to clipboardMay 5, 2024

+767-3

Commits

Commits on Mar 6, 2024

• Initialise mediation functions

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Commits on Mar 12, 2024

• Finalise mediation wrapper and add vignettes

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• Fix se not found error

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• Replace n_distinct in mediate with base funs

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• Fix error in mediate example and simplify argument checks

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Commits on Mar 13, 2024

• Add comments to mediate functions

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• Add tests for getMediation

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Commits on Mar 16, 2024

• Replace se with x and print with message in mediate funs

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• Merge branch 'master' into mediation

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• Update docs on getMediation

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• Fix missing arg verbose in mediate fun

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Commits on Mar 22, 2024

• Use standard bioc indentation and utility names

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Commits on Apr 14, 2024

• Merge branch 'devel' into mediation

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• Implement feedback 1

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• Create addMediation function

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Commits on Apr 15, 2024

• Implement addMediation and speed up examples

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• Streamline code of getMediation function

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Commits on Apr 16, 2024

• Bump version

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• Merge branch 'devel' into mediation

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• Add miaTime to remotes

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• Merge remote-tracking branch 'origin/mediation' into mediation

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• Merge branch 'devel' into mediation

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• Fix importFrom calls and use agglomerate in mediate.R

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• Add getMediation to index

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• Print head of mediation results in example

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• Speed up example and test for getMediation

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Commits on Apr 17, 2024

• Keep lines within 80 characters for getMediation

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Commits on Apr 19, 2024

• Run mediation example only if miaTime installed

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• Merge branch 'devel' into mediation

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• Try to fix miaTime require issue

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• Try requireNamespace instead of require

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Commits on Apr 20, 2024

• Merge branch 'devel' into mediation

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Commits on Apr 22, 2024

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Commits on Apr 26, 2024

• SOlve conflicts with devel

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• Minor fixes

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• Bump version

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Commits on May 5, 2024

• Solve conflicts and bump version

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