ruff check passes

docs/source/conf.py

@@ -5,6 +5,7 @@
 
 # -- Project information -----------------------------------------------------
 # https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information
+from __future__ import annotations
 
 project = "foundation"
 copyright = "2024, Michael J. Wilson"

python/foundation/tools.py

@@ -1,3 +1,5 @@
+from __future__ import annotations
+
 from pysam import VariantFile
 
 
@@ -29,7 +31,8 @@ def load_vcf(fpath: str) -> VariantFile:
     vcf = VariantFile(fpath)
 
     for rec in vcf.fetch("chr1", 1_000_000, 1_200_000):
-        print(rec)
+        assert rec
+
         break
 
     return vcf

tests/conftest.py

@@ -1,5 +1,8 @@
+from __future__ import annotations
+
 import pytest
 
+
 @pytest.fixture(scope="module")
 def none_fixture():
     return None

tests/example_test.py

@@ -1,5 +1,7 @@
-import pytest
+from __future__ import annotations
 
 
 def test_example():
-    assert (1+1) == 2
+    expectation = 2
+
+    assert expectation == (1 + 1)