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pbgreedyphase

A collection of two programs: partitionByPhasedSNVs and readsToSNVList that are used in both SDA (segmental duplication assembly) and phased-sv.

Name		Name	Last commit message	Last commit date
Latest commit History 50 Commits
args @ 3de44ec		args @ 3de44ec
blasr		blasr
htslib @ c31dedd		htslib @ c31dedd
seqan @ a0691b9		seqan @ a0691b9
vcflib @ c7b70d8		vcflib @ c7b70d8
.gitignore		.gitignore
.gitmodules		.gitmodules
FastaIndex.h		FastaIndex.h
FragmentsToPhaseGraph.py		FragmentsToPhaseGraph.py
GenotypedRead.h		GenotypedRead.h
Makefile		Makefile
MpileupToFreq.py		MpileupToFreq.py
PartitionByPhasedSNVs.cpp		PartitionByPhasedSNVs.cpp
PartitionTools.h		PartitionTools.h
Pipeline.sh		Pipeline.sh
PrintHetFreq.py		PrintHetFreq.py
README.md		README.md
ReadToSNVList.cpp		ReadToSNVList.cpp
SNVDB.h		SNVDB.h
SamUtils.h		SamUtils.h
SampleTools.h		SampleTools.h