Merge pull request #5 from lldelisle/dev

Release 1.1.3
lldelisle · Mar 11, 2024 · 5936a6c · 5936a6c
2 parents ec3a6d1 + c8de8f6
commit 5936a6c
Show file tree

Hide file tree

Showing 3 changed files with 11 additions and 3 deletions.
diff --git a/baredSC/_version.py b/baredSC/_version.py
@@ -2,4 +2,4 @@
 Store version number
 """
 
-__version__ = '1.1.2'
+__version__ = '1.1.3'
diff --git a/baredSC/oned.py b/baredSC/oned.py
@@ -342,7 +342,7 @@ def plots_from_pdf(x, pdf, title, output, data, col_gene, osampx, xscale, target
     else:
       raise NotImplementedError("Only xscale Seurat and log are implemented.")
     plt.plot(x, density, color='green')
-  except NotImplementedError:
+  except (NotImplementedError, np.linalg.LinAlgError):
     print("Could not compute density from input data.")
   plt.xlim(xmin, xmax)
   plt.ylim(0, )
@@ -418,7 +418,7 @@ def plots_from_pdf(x, pdf, title, output, data, col_gene, osampx, xscale, target
     else:
       raise NotImplementedError("Only xscale Seurat and log are implemented.")
     plt.plot(x, density, color='green', label='density from data')
-  except NotImplementedError:
+  except (NotImplementedError, np.linalg.LinAlgError):
     print("Could not compute density from input data.")
   # Posterior using full pdf
   plt.plot(x, post_all_cells, color='orange', label='mean post pdf')

diff --git a/docs/content/releases.rst b/docs/content/releases.rst
@@ -1,6 +1,14 @@
 Releases
 ========
 
+1.1.3
+-----
+
+Bug fix:
+^^^^^^^^
+
+- In 1d when kde could not be computing with recent version of scipy. baredSC was stoped raising a `linalg.LinAlgError`.
+
 1.1.2
 -----