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linsalrob committed Jun 28, 2022
1 parent 7ae0699 commit ac999bb
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions RunningPhiSpy/submit_phispy_vogs_download.slurm
Original file line number Diff line number Diff line change
Expand Up @@ -38,11 +38,11 @@
# cd ..


DATE=20220525
DATE=20220606
ASS=$DATE/assembly_summary_$DATE.txt.gz
VOGS=/home/edwa0468/VOGs/vog99/VOGs.hmm

NEED=0000$SLURM_ARRAY_TASK_ID
NEED=${NEED:(-4)}

snakemake -s ~/GitHubs/EdwardsLab/phage/phispy_vogs_download.snakefile --config filelist=$DATE/needed/x$NEED gbk=$DATE/gbk output=$DATE/phispy assembly=$ASS vogs=$VOGS --profile slurm_small
snakemake -s ~/GitHubs/PhispyAnalysis/RunningPhiSpy/phispy_vogs_download.snakefile --config filelist=$DATE/needed/x$NEED gbk=$DATE/gbk output=$DATE/phispy assembly=$ASS vogs=$VOGS --profile slurm_small

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