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Update URL for DANDI Docs
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kabilar authored Jan 10, 2025
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2 changes: 1 addition & 1 deletion docs/about.md
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## Acknowledgements

Thank you to the DANDI Archive project for setting up the documentation framework that is utilized here. See the [DANDI Handbook](https://www.dandiarchive.org/handbook/) for more information.
Thank you to the DANDI Archive project for setting up the documentation framework that is utilized here. See the [DANDI Docs](https://docs.dandiarchive.org) for more information.

## License

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2 changes: 1 addition & 1 deletion docs/index.md
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The LINC documentation is meant to share information across the LINC project investigators. If you are new to the LINC project, you can start on the [Upload data](upload.md) page for a description of how to interact with the LINC data sharing platform.

Since the LINC infrastructure is a fork of the DANDI Archive, please refer to the [DANDI Docs](https://www.dandiarchive.org/handbook) for comprehensive documentation.
Since the LINC infrastructure is a fork of the DANDI Archive, please refer to the [DANDI Docs](https://docs.dandiarchive.org) for comprehensive documentation.

## Quick Links

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The above example will create a directory called `/path/to/my/staging/area/101010`. Any data files that you want to upload to the lincbrain.org dataset have to first be saved here, and organized according to the [Brain Imaging Data Structure (BIDS)](https://bids-specification.readthedocs.io/).

For more information on the `--preserve-tree` option please see the [DANDI Handbook](https://www.dandiarchive.org/handbook/12_download/#download-the-dandisetyaml-file-and-a-specific-file-within-the-directory-tree-of-the-dandiset).
For more information on the `--preserve-tree` option please see the [DANDI Docs](https://docs.dandiarchive.org/12_download/#download-the-dandisetyaml-file-and-a-specific-file-within-the-directory-tree-of-the-dandiset).

## Organize your data
An example from a (fictional) dataset that includes dMRI and histology data from two brains is shown below. This can be used as a guide for organizing your own dataset. A few things to watch out for:
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- Deployment: https://github.com/lincbrain/webknossos/blob/ak-dev/LINC_DEPLOYMENT.md
- Development: https://github.com/lincbrain/webknossos/blob/ak-dev/LINC_DEVELOPMENT.md
- Engaging Cluster: "engaging.md"
- DANDI Docs: https://www.dandiarchive.org/handbook
- DANDI Docs: https://docs.dandiarchive.org
- API:
- DANDI Client: https://dandi.readthedocs.io
- Contribute documentation: "contribute.md"
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