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update version docs
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yihming committed Jul 14, 2020
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Expand Up @@ -63,10 +63,10 @@ Stable version - v0.15.0
- `10 <https://portal.firecloud.org/?return=terra#methods/cumulus/cellranger_workflow/10>`__
- Run Cell Ranger tools, which include extracting sequence reads using cellranger mkfastq or cellranger-atac mkfastq, generate count matrix using cellranger count or cellranger-atac count, run cellranger vdj or feature-barcode extraction
* - cumulus/count
- `13 <https://portal.firecloud.org/?return=terra#methods/cumulus/count/13>`__
- `14 <https://portal.firecloud.org/?return=terra#methods/cumulus/count/14>`__
- Run alternative tools (STARsolo, Optimus, Salmon alevin, or Kallisto BUStools) to generate gene-count matrices from FASTQ files.
* - cumulus/cellranger_create_reference
- `7 <https://portal.firecloud.org/?return=terra#methods/cumulus/cellranger_create_reference/7>`__
- `8 <https://portal.firecloud.org/?return=terra#methods/cumulus/cellranger_create_reference/8>`__
- Run Cell Ranger tools to build sc/snRNA-seq references.
* - cumulus/cellranger_atac_aggr
- `2 <https://portal.firecloud.org/?return=terra#methods/cumulus/cellranger_atac_aggr/2>`__
Expand All @@ -84,7 +84,7 @@ Stable version - v0.15.0
- `8 <https://portal.firecloud.org/?return=terra#methods/cumulus/smartseq2_create_reference/8>`__
- Generate user-customized genome references for SMART-Seq2 data.
* - cumulus/cumulus
- `23 <https://portal.firecloud.org/?return=terra#methods/cumulus/cumulus/23>`__
- `24 <https://portal.firecloud.org/?return=terra#methods/cumulus/cumulus/24>`__
- Run cumulus analysis module for variable gene selection, batch correction, PCA, diffusion map, clustering, visualization, differential expression analysis, cell type annotation, etc.
* - cumulus/cumulus_subcluster
- `16 <https://portal.firecloud.org/?return=terra#methods/cumulus/cumulus_subcluster/16>`__
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